PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06577.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1121aa    MW: 126821 Da    PI: 6.1075
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06577.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.41.8e-55211363118
        CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                 + ++rwl++ ei+aiL n++k+ +++e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+een++f+rr+ywl
  KHN06577.1  21 EAQHRWLRPAEICAILSNHKKFLIASEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFRRRTYWL 119
                 669************************************************************************************************ PP

        CG-1 102 Leeelekivlvhylevk 118
                 Leeel++ivlvhy++vk
  KHN06577.1 120 LEEELSHIVLVHYRHVK 136
                 **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.79215141IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-4821134IPR005559CG-1 DNA-binding domain
SuperFamilySSF812967.0E-16539624IPR014756Immunoglobulin E-set
PfamPF018335.4E-5539615IPR002909IPT domain
Gene3DG3DSA:2.60.40.103.5E-4540613IPR013783Immunoglobulin-like fold
CDDcd002041.62E-15721833No hitNo description
Gene3DG3DSA:1.25.40.209.3E-19721837IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.359724845IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.24E-19725836IPR020683Ankyrin repeat-containing domain
PfamPF127963.7E-8746841IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0034774803IPR002110Ankyrin repeat
PROSITE profilePS500889.671774806IPR002110Ankyrin repeat
SMARTSM00248110813842IPR002110Ankyrin repeat
SuperFamilySSF525406.11E-7942995IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001515945967IPR000048IQ motif, EF-hand binding site
PfamPF006120.053947966IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.492947975IPR000048IQ motif, EF-hand binding site
SMARTSM000150.16968990IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584969993IPR000048IQ motif, EF-hand binding site
PfamPF006120.0034971988IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1121 aa     Download sequence    Send to blast
MAEARHYVPP SQLDIKQIIL EAQHRWLRPA EICAILSNHK KFLIASEPAH MPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVREAHER LKAGSVDVLH CYYAHGEENE NFRRRTYWLL  120
EEELSHIVLV HYRHVKGTKA NFTCAKENEE TLPYAQQTDK IMPKTEMETS LSSTLHPHSY  180
QVPSQTMDRS MNSSQASEYE EAESAFNNHA SSEFYSFLEL ECPVEKITPQ PADSYSPRPL  240
TRKSVPNMNC IIESGTDDQE KSPVIPGVNY ISLTQDNKIK DIHNFGLTYE SPKPLGFSSW  300
EGILKNNAGS QHVPFQPLFP GTQPDNMGIN SKFSQGHEIM VPYLTTSIAK QHENGSLIQA  360
EGNWQAYDVD SLRMSSWPID SAYSGSSCDI TCSNREQEVN DVDLQKSLEQ CLLHPYKQNK  420
VFMQNDPQEK LLNEKEKIKS DLEANRILDG IEDTYFTFKR TLLDGSPAEE GLKKLDSFNQ  480
WMSKELADVE ESNKPSTSGG YWDTVESENE VGNTTIPSQG HLDTYVLDPS VSHDQLFSII  540
DYSPSWAFEG SEIKVIISGR FLRSQHEAEQ GKWSCMFGEV EVPAEIIAKG VLCCHTPPHK  600
AGRVPFYVTC SNRLACSEVR EFDFQVNYTP EVNTTGENRG STFDTFSIRF GELLSLGHAF  660
PQNSDSISVS EKSQLRSKIN SLLREEEDDW DKLLKLTQEE DFSPENLQEQ LLQNLLKDKL  720
HAWLLQKITE EGKGPNILDE GGQGVLHFAS ALGYDWALEP TIVAGVNVNF RDVNGWTALH  780
WAAFCGRERT VAFLISLGAA PGALTDPCPE HPSGRTPADL ASANGHKGIA GYLAESSLSA  840
HLTTLDLNRD AGENSGAKVV QRVQNIAQVN DLDGLSYELS LKDSLAAVRN ATHAAARIHQ  900
VFRMQSFQRK QLKEYDDKLG LSDERALSLV KMNMKSHKSG PRDEPVHAAA VRIQNKFRSW  960
KGRREFLMIR QRIVKIQAHV RGHQVRKSCG KIIWSVGILE KVILRWRRKG SGLRGFKPEA  1020
NSEGTMIQDV SSTDDDYDVL KEGRKQTEQR LQKALARVKS MVQYPEARDQ YHRLLNVVTE  1080
IQENQVKHES SYNNSEEPRE FGDLNDLEAL LDEDIFMPTA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hb5_A8e-1272586220157Engineered Protein
4hb5_B8e-1272586220157Engineered Protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028233115.10.0calmodulin-binding transcription activator 3-like isoform X1
TrEMBLA0A445KQL40.0A0A445KQL4_GLYSO; Calmodulin-binding transcription activator 2 isoform A
STRINGGLYMA05G31190.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]