PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06389.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 251aa    MW: 28188.6 Da    PI: 8.3751
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06389.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.9e-162373155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                +++ GVr++  +g+W+AeI+       k+ r +lg++ taeeAa+a+++a+  l+g
  KHN06389.1 23 PKFVGVRQRA-SGKWAAEIKG----TsKKIRLWLGTYQTAEEAARAYDEAACLLRG 73
                799****999.7******766....2347**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-122373IPR001471AP2/ERF domain
CDDcd000182.23E-302380No hitNo description
SMARTSM003809.2E-322487IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-182482IPR016177DNA-binding domain
PROSITE profilePS5103219.1112481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-262481IPR001471AP2/ERF domain
PRINTSPR003674.1E-72536IPR001471AP2/ERF domain
PRINTSPR003674.1E-74763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEYQNQRAKE GRFCEKLKIK NRPKFVGVRQ RASGKWAAEI KGTSKKIRLW LGTYQTAEEA  60
ARAYDEAACL LRGSNTRTNF STQGCGVATN SPISLKLRNL LDRKAMSNQS QSQSQIQRQS  120
SMISSTFQGA DTSASPNVSA INKIMVMENY SACSSEGKSL FLVQNHQVCD NPYGLDMNMI  180
NCSTGITPNT SQFDYSWPLA QQRINELPIS KDDFGLNAER QLSGYATNEC HEEDTYAYDV  240
NYPLSHFFCF T
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06389.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-81AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028232840.10.0ethylene-responsive transcription factor ERN3-like
SwissprotA9Y0K98e-99ERN3_MEDTR; Ethylene-responsive transcription factor ERN3
TrEMBLA0A445KPR60.0A0A445KPR6_GLYSO; Ethylene-responsive transcription factor ERN3
STRINGGLYMA05G29011.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF156461010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-25related to AP2 11
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]