PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06348.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 464aa    MW: 51821.5 Da    PI: 6.5147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06348.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12286331454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  KHN06348.1 286 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYISEL 331
                 799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-4429195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.615282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-16283343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-14285336No hitNo description
Gene3DG3DSA:4.10.280.102.1E-15286342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10286331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-14288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEDLIISPSS SSSLVSLPHE NPTPTPTLLQ KLQFLLQSQP DWWVYAIFWQ ASHDDNGNLY  60
LSFGEGHFQG TKETSPKSLT IPTKKFMRAP TNDTNNINDA EWFYVVSLTR TFAVNNNASS  120
SSSSLPGKSF ALGSVLWLNN MHELQFYNCE RSNEAQVHGI ETLICIPTQN GVVEMGSYDT  180
IKQNWNLVQH VKSLFITPPD PVPVEILDDH TISFADIGIV AGVQETKKRR INQTQTQKPP  240
RKNDNYVNSE HSDSDCPTLP TATTPTTSEP KKRGRKPILG RETPVNHVEA ERQRREKLNH  300
RFYALRAVVP NVSRMDKASL LSDAVAYISE LKAKIEYLES QQPRDSSKKV KTEMTDTLDN  360
HSTTTISTVV DQSGPEPRLG PSPLGLEVDV KIVGPDAMVR VQSENVNHPG ARLMGALRDL  420
EFQVHHASMS CVNDLMLQDV VVKLPNGMRS EEGLKSAILM RLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-28271958192Transcription factor MYC3
4rqw_B3e-28271958192Transcription factor MYC3
4rs9_A3e-28271958192Transcription factor MYC3
4yz6_A3e-28271958192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06348.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311090.0KT031109.1 Glycine max clone HN_CCL_177 bHLH transcription factor (Glyma07g05740.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528771.10.0transcription factor MYC2
RefseqXP_028239343.10.0transcription factor MYC2-like
TrEMBLA0A445JSL80.0A0A445JSL8_GLYSO; Transcription factor bHLH14
TrEMBLI1KHR70.0I1KHR7_SOYBN; BHLH transcription factor
STRINGGLYMA07G05740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-70bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]