PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN06202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 343aa MW: 38775.5 Da PI: 5.3496 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.7 | 4.7e-29 | 168 | 255 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+evGF vr+sk ++s+r+g+ + rt+vC+keg+r +k++ k r+raetr+gC+a+++v+k ++gkw+v+k+++eH+H+l+p KHN06202.1 168 FYNAYATEVGFIVRVSKLSRSRRDGTAIGRTLVCNKEGFRMADKRE--KIVRQRAETRVGCRAMIMVRKLSSGKWVVAKFVKEHTHPLTP 255 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-26 | 168 | 255 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MRDNLGETEN EVEYENLRAK EALLMLRNNE VALVEEQVFL FCVVVFFVLY CVGGVVVQHE 60 TEDRKIISGI THRFHHDLIF MEVEIDGSVT VETVGNTAIG EVSSIADDNR EGGSSVEPND 120 NQDQHDNGTQ DSSGGITIPS AIPTVSVVSV EEPYVGQEFG SEAAAHAFYN AYATEVGFIV 180 RVSKLSRSRR DGTAIGRTLV CNKEGFRMAD KREKIVRQRA ETRVGCRAMI MVRKLSSGKW 240 VVAKFVKEHT HPLTPGKGRR DFYYEQYPTE QDKIRELSQQ LATEKKRSAA YKRHLELIFE 300 QIEEQNDNLS KKIQHIVDCV KEMEAKEEHS RQCEGDGSQR TTE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN06202.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094494 | 0.0 | BT094494.1 Soybean clone JCVI-FLGm-18B16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537936.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X2 | ||||
Refseq | XP_028190112.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A0B2PF49 | 0.0 | A0A0B2PF49_GLYSO; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | GLYMA12G05600.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 4e-87 | FAR1 family protein |
Publications ? help Back to Top | |||
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