PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN06173.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 411aa MW: 47200.1 Da PI: 9.6985 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.2 | 6.8e-14 | 17 | 97 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++l +p +f+++ +++ +l +sg +W+v++ kk++ +++ +GW++F k+n + +f++F+++g ++f +v++f KHN06173.1 17 NTKQLKVPEEFLKHLNKD--LWSNSVLIGPSGDKWQVTI--LKKGNNVYMDNGWSQFLKDNSVVLDEFLLFTYHGGNCF--YVQIFG 97 457899******655544..4446899************..********************************999999..999986 PP | |||||||
2 | B3 | 65.1 | 1.1e-20 | 312 | 406 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l+++ +l++++l + +fa+++ + e ++ l +++g+sWev++ y +++++ +++GW++Fv++n+L gD+++F++++ ++++ v++fr+ KHN06173.1 312 HLLTKCNLERCILLIAAEFARKYI-P-EALEQIYLWNSEGKSWEVRVHYFRNRNTwyAAFKRGWERFVRDNKLMKGDTCIFEVEE-EQGHWSVHIFRT 406 567788999**************4.2.33448***************99555555478899*********************755.99999****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-18 | 6 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-17 | 6 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.252 | 6 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-13 | 11 | 99 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.35E-12 | 11 | 96 | No hit | No description |
Pfam | PF02362 | 6.5E-11 | 17 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-24 | 302 | 406 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-21 | 303 | 407 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.8E-13 | 309 | 407 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.916 | 309 | 407 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-17 | 312 | 406 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.66E-17 | 314 | 405 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MDYHQDNPAV FFTTIKNTKQ LKVPEEFLKH LNKDLWSNSV LIGPSGDKWQ VTILKKGNNV 60 YMDNGWSQFL KDNSVVLDEF LLFTYHGGNC FYVQIFGGNG LERLCRKEAR EEQAATPQFF 120 DLPFSNKASI SDGCEIKKTR QEQASAPSLA RTNKSKQRKT FVGSSHLHES NSYKKDLPSS 180 NKGTLSKGCE IKKTRQEQAA TPSFLRPNKI KQRKTSARSS NLNESKSCQE GQERVATLSW 240 ARTNNYNSTQ RKTSAGSSHL HESNSSKEDL PFSNKASLSK DFPKPQSSIN IECSEACKLA 300 ESFTSRNPHW KHLLTKCNLE RCILLIAAEF ARKYIPEALE QIYLWNSEGK SWEVRVHYFR 360 NRNTWYAAFK RGWERFVRDN KLMKGDTCIF EVEEEQGHWS VHIFRTGCAP H |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN06173.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT321660 | 0.0 | KT321660.1 Glycine max Glyma11g13220 (Glyma11g13220) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304570.1 | 0.0 | B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_028186692.1 | 0.0 | B3 domain-containing protein Os11g0197600-like isoform X1 | ||||
TrEMBL | A0A0B2PEW8 | 0.0 | A0A0B2PEW8_GLYSO; B3 domain-containing protein | ||||
STRING | GLYMA11G13220.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14239 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 2e-12 | B3 family protein |
Publications ? help Back to Top | |||
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