PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN06125.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 164aa MW: 19042.5 Da PI: 3.7443 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.6 | 2e-08 | 115 | 159 | 1 | 46 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 +fY+ YAk GFsvr+s+ ++ + e+ ++tfvCs+ g+r+ +++ KHN06125.1 115 QFYCWYAKISGFSVRNSHIVRN-TCMETLQQTFVCSCAGYRRFSTS 159 6*****************9999.66679***********9987665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-6 | 115 | 159 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
MHEVGDDLDD IMSELESTDN FRSFVNGDGD NDVTEVYEND DDDQHDVRVE DEEEVDSELQ 60 NDDDGDYDDF WIPGLSKEEC ISIDSMVDIR QFDMKEISDE VVGRLDFGDL ELAYQFYCWY 120 AKISGFSVRN SHIVRNTCME TLQQTFVCSC AGYRRFSTSD TRIR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN06125.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC235210 | 0.0 | AC235210.1 Glycine max strain Williams 82 clone GM_WBb0019I19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028196602.1 | 1e-57 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0B2P9T8 | 1e-115 | A0A0B2P9T8_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA06G24610.2 | 4e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3265 | 7 | 34 |
Publications ? help Back to Top | |||
---|---|---|---|
|