PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06084.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 364aa    MW: 41322.5 Da    PI: 8.0704
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06084.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.91e-2476119144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  KHN06084.1  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119
                 79***************************************987 PP

2QLQ56.86.6e-20842236
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  KHN06084.1  8 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 42
                8******************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-11743IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.6E-15841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.36843IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9876120IPR014977WRC domain
PfamPF088791.3E-2077119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNGRNRFPFT PSQWQELEHQ ALIYKYMASG ISIPPDLLFT IKRSYFDSPL SSRLLPNQPQ  60
HFGWNYLQMG LGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVEV  120
LKSTTTPSSS TTNSNASSTQ QAISSITKIN STLSPLASSE THQHHHYPQH YGSFLYHHHP  180
PSRSSGIGLS FEDNSAPLFL DTGSCSQSNT DCRSRYVYGE KEEVDEHAFF TEPCGVMKSF  240
SASSMDDSWQ LTPLTMSSSS SSSKQRSSFG LSSDYSCLQL QSHSKQQQQE HHQDQGCYMF  300
GAGQVVKEEP QKTVHRFFDE WPHKGREGSW LDLDDKSSTT QLSISIPTSS HDFSTFSSRT  360
HHDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06084.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-121AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547502.20.0growth-regulating factor 1 isoform X1
RefseqXP_028202879.10.0growth-regulating factor 1-like isoform X1
TrEMBLA0A445GUX50.0A0A445GUX5_GLYSO; Growth-regulating factor 4
TrEMBLI1MHE90.0I1MHE9_SOYBN; Uncharacterized protein
STRINGGLYMA15G19460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-54growth-regulating factor 5