PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN06054.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 335aa MW: 36903.9 Da PI: 7.3229

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN06054.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.3	1.9e-15	46	95	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq KHN06054.1 46 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVMEYVQYLQ 95 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-18	42	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-22	43	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.618	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-13	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.20E-14	46	99	No hit	No description
SMART	SM00353	1.6E-11	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MRAGKGSQEE DEYEEEEFGS SKKQGTSSAP NANKDGKAID KASAIRSKHS VTEQRRRSKI 60 NERFQILRDL IPHSDQKRDT ASFLLEVMEY VQYLQEKVQK YEGSYQGWGQ EPLKLMPWRN 120 SHWRVQSFAG QPTAVKNGLG PVSPFPVKFD ESNASISPTM LSGTQNTIDP YQSRDIVNKT 180 AERQPDLVNK GMPLPLAMHA NMSVPVRSDG VLAHPLHGTV SDPQSTECPT TSEPQNQQDE 240 FTVEGGTISI SSAYSQGLLN NLTQALQSAG LDLSQASISV QINLGKRGNK GLSCGTSSPK 300 HHDNPSSNNQ TIAHFRDAGS GEDSDQVQKR MKTYK

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN06054.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093525	0.0	BT093525.1 Soybean clone JCVI-FLGm-24O3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001239754.1	0.0	uncharacterized protein LOC100795416
Refseq	XP_028232269.1	0.0	transcription factor BIM2-like isoform X2
Swissprot	Q9CAA4	1e-113	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0B2PEV8	0.0	A0A0B2PEV8_GLYSO; Transcription factor BIM2
TrEMBL	C6T7U1	0.0	C6T7U1_SOYBN; Uncharacterized protein
STRING	GLYMA01G09010.5	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-110	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]