PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05961.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 309aa    MW: 35051.1 Da    PI: 5.8148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05961.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-192978255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  KHN05961.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAALAYDEAARRLYG 78
                69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-312887No hitNo description
PfamPF008472.4E-132978IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-212987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-302987IPR001471AP2/ERF domain
SMARTSM003803.1E-352992IPR001471AP2/ERF domain
PROSITE profilePS5103222.6822986IPR001471AP2/ERF domain
PRINTSPR003673.0E-103041IPR001471AP2/ERF domain
PRINTSPR003673.0E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEGCKMFPPK PWKKGPTRGK GGPQNSSCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAALAYD EAARRLYGPD AYLNLPHMMM QPTIFTNSTA TKSHKYFKWF PSKNFISMFP  120
SRGGLLNLNA QPSVHVIHQK LQELKQNGVV ATSQTQSSPH TSSLSTHPKV VDLENFDIQN  180
HAEILPPLQE GNSRVSSQKT IVGDFEEKPQ IDLLEFLQQM GILKEEREEE KTNSSGSSTT  240
VSEAASRDES SEQAGVFSDM SSVNWEELIE MHEHDHGVAD SFYRASEEIQ FEAYDINEDL  300
TFSPSIWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05961.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518110.10.0dehydration-responsive element-binding protein 2F
RefseqXP_028184724.10.0dehydration-responsive element-binding protein 2F-like
TrEMBLA0A0B2P9S00.0A0A0B2P9S0_GLYSO; Dehydration-responsive element-binding protein 2F
TrEMBLI1JG740.0I1JG74_SOYBN; Uncharacterized protein
STRINGGLYMA02G31350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-69ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]