PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN05932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 163aa MW: 18021.6 Da PI: 9.171 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 26 | 48 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H KHN05932.1 26 FECKTCNRKFNSFQALGGHRASH 48 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.4 | 0.001 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cg+ Fs L H+r+H KHN05932.1 81 HNCFICGQGFSLGQALGGHMRRH 103 67********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.68E-8 | 25 | 48 | No hit | No description |
Pfam | PF13912 | 2.4E-11 | 25 | 50 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 26 | 48 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 26 | 53 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.68E-8 | 76 | 103 | No hit | No description |
SMART | SM00355 | 1.2 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.224 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-7 | 81 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MQNCSISITP DTTSVSSSTT SPEEVFECKT CNRKFNSFQA LGGHRASHNK RVEMEGEEQQ 60 LKLKNKGKIY GLGKQSEPKI HNCFICGQGF SLGQALGGHM RRHRDATNDV FSSINQVVAK 120 VSVLKRSCND KVFCLDLNLS PLENDLKLLL FGKVSPKVNP SSF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN05932.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028184148.1 | 1e-118 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A0B2PEB1 | 1e-116 | A0A0B2PEB1_GLYSO; Zinc finger protein ZAT11 | ||||
STRING | GLYMA10G05190.1 | 1e-116 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 2e-34 | C2H2 family protein |
Publications ? help Back to Top | |||
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