PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05907.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 476aa    MW: 52551.8 Da    PI: 6.5598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05907.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.4e-05271307555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRd         r+l+P +      K +Ka++L +A+eY+ksLq
  KHN05907.1 271 HNLSERRRRD---------RKLIPRC-----NKSDKASMLDEAIEYLKSLQ 307
                 8888888888.........699**98.....69*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.959257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-8268315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-10269311No hitNo description
SuperFamilySSF474591.31E-12269334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-5272312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDDDDEEYPI PVSKKPSTQN DEIMELLWQN GQVVMQNQNQ RPFRKQPPTT DGDGPIPARE  60
IRSSEAENYN SQHLFMQEDE MASWLHYPIH EDPPPFDHHD FCADILYPPP YATASQNQSS  120
ASVQSSVRTT ELQHPAPRPP IPPPRRQEHT LSRIHNFTHF AKHGNASSSS KAAAPAQPTG  180
TGARAAAGKT PASDGGRETA TCDVTVTSSP GGSSGSAEPV QREPVVNRKR KGREQEESEY  240
QSEDVDFESP EAKKQVRGST STKRSHAAEV HNLSERRRRD RKLIPRCNKS DKASMLDEAI  300
EYLKSLQLQV QIMSMGCGMV PMIFPGIQQY MPPMGMGIGM GMGMGMGMEM GMGMNRSVMP  360
FPNMLASSTL PAATATAHLG PRFPMPPFHM PHVATPDSSR MQGANHPDNN MLNSLGTLDP  420
DQSCIPNFTD PYQQYLSLQQ AQLQLMQTMN QPNVSKPSTS RGQENPEKHQ SGKVSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279ERRRRD
2274282ERRRRDRKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05907.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311140.0KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184192.10.0transcription factor PIF1-like
RefseqXP_028184193.10.0transcription factor PIF1-like
RefseqXP_028184194.10.0transcription factor PIF1-like
RefseqXP_028184195.10.0transcription factor PIF1-like
TrEMBLA0A0B2PE880.0A0A0B2PE88_GLYSO; Transcription factor PIF1
STRINGGLYMA10G04890.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-31phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]