PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN05853.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 372aa MW: 40998.3 Da PI: 6.8455

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN05853.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.5e-13	180	226	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++ +k+L KHN05853.1 180 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQQVKEL 226 79***********************9.....8*********9988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.679	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-10	180	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-13	181	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-14	181	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-12	183	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.74E-4	190	229	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MKKELEDHGQ CSSPPIINNN IQSYKEHLLL QQQMQQNSDI FGGGGGSKGL MFPPEVVSSI 60 LQQQPWSIPP VPSFNPNPVH YNNTNPVHLH EQASSFLVPP PTTTPSPYAS FFSSRRVVPS 120 LHFAYEGPSS HHDHHHLRII SDTLGPMVQP GSAAPFGLQA ELGKMTAQEI MEAKALAASK 180 SHSEAERRRR ERINNHLAKL RSLLPNTTKT DKASLLAEVI QQVKELKRQT SLIVEMSTVP 240 TESDELTVDA IDEDGKFVIK ASLCCEDRSD LLPDLIKTLK ALRLRTLRAE ITSLGGRVKN 300 VLVITGDEEE NSNTNNGEQS MQQQYCISSI QEALKAVMEK SGGGDESASG NVKRQRTTTT 360 NNKINILEQS SL

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MKKELEDHGQ CSSPPIINNN IQSYKEHLLL QQQMQQNSDI FGGGGGSKGL MFPPEVVSSI  60
LQQQPWSIPP VPSFNPNPVH YNNTNPVHLH EQASSFLVPP PTTTPSPYAS FFSSRRVVPS  120
LHFAYEGPSS HHDHHHLRII SDTLGPMVQP GSAAPFGLQA ELGKMTAQEI MEAKALAASK  180
SHSEAERRRR ERINNHLAKL RSLLPNTTKT DKASLLAEVI QQVKELKRQT SLIVEMSTVP  240
TESDELTVDA IDEDGKFVIK ASLCCEDRSD LLPDLIKTLK ALRLRTLRAE ITSLGGRVKN  300
VLVITGDEEE NSNTNNGEQS MQQQYCISSI QEALKAVMEK SGGGDESASG NVKRQRTTTT  360
NNKINILEQS SL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	190	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN05853.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028201794.1	0.0	transcription factor bHLH30-like
Refseq	XP_028201800.1	0.0	transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-111	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0B2PDY9	0.0	A0A0B2PDY9_GLYSO; Transcription factor bHLH30
STRING	GLYMA02G11190.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-90	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]