PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN05794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 570aa MW: 61275 Da PI: 4.3541 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.5 | 3e-10 | 237 | 259 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tGtCk+G +CkF+H+ KHN05794.1 237 EDCAFYLKTGTCKFGFNCKFNHP 259 89********************9 PP | |||||||
2 | zf-CCCH | 27.4 | 5.6e-09 | 285 | 305 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++r+G Ck+G CkF+H KHN05794.1 285 ECKYYLRSGGCKFGKACKFNH 305 6******************** PP | |||||||
3 | zf-CCCH | 36.6 | 7.5e-12 | 329 | 352 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C +++rtG Ck+G++C+F+H+ KHN05794.1 329 EKECLYYMRTGSCKFGANCRFNHP 352 679********************9 PP | |||||||
4 | zf-CCCH | 29.1 | 1.7e-09 | 463 | 489 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ KHN05794.1 463 PGEPECSYFLKTGDCKFKSNCKFHHPK 489 5799*********************96 PP | |||||||
5 | zf-CCCH | 32.9 | 1.1e-10 | 511 | 534 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G+ CkF H+ KHN05794.1 511 QNVCTYYRRYGICKFGPACKFDHP 534 568********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.36E-6 | 232 | 261 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.305 | 233 | 261 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 233 | 260 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-8 | 237 | 259 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.601 | 280 | 308 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 280 | 307 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-5 | 284 | 308 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-6 | 285 | 305 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 286 | 307 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.699 | 326 | 354 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 327 | 353 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-5 | 328 | 353 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-9 | 329 | 352 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 332 | 351 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 462 | 489 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.061 | 462 | 490 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-7 | 464 | 489 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 467 | 491 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-4 | 508 | 535 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.906 | 508 | 536 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-5 | 510 | 536 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-8 | 511 | 534 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-4 | 513 | 533 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016740 | Molecular Function | transferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MEPLESESVS SSAKDPLLGE PSSSVHPLDH DPQPSDLNHV TPVDDALGEE LQGKLDLKDE 60 GESDNKGSNL EDGGEKLSED KGSNLEDESG KLSDEGAAPE GGKGEGCDGD LGGVANDDDG 120 VIGDDLVSVA DDGGVVRDDL VGGVVRDDLV VVVDDGGVVR DDLVVVDDDD DGVRDDVVVV 180 VDDDDGWNGG GDEGCDCIEN VNVNGSESDK VGGDVEGVKD ERSSGRAQQY PLRPEAEDCA 240 FYLKTGTCKF GFNCKFNHPL RRKNQAKKEN AGEREEQAER SGQMECKYYL RSGGCKFGKA 300 CKFNHTRGKS SSASAAELNF LGLPIRVGEK ECLYYMRTGS CKFGANCRFN HPDPTTVGGG 360 DSPSGYGNGS SISLQGVSQS SISSWSSTRP LNESAPFVPV ILSPNPGVSP QSSEWNGYQA 420 PVYLSERSLH PPSTYVMNNP AMESNVYMHH QKQMLVEEFP ERPGEPECSY FLKTGDCKFK 480 SNCKFHHPKN RIARLPLCNL SDKGLPLRPD QNVCTYYRRY GICKFGPACK FDHPAPSTMA 540 GHDQQSTYIN SAGVDVAENG GVEDGNQQSV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN05794.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235340 | 0.0 | AC235340.1 Glycine max strain Williams 82 clone GM_WBb0086A04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028229375.1 | 0.0 | zinc finger CCCH domain-containing protein 67-like | ||||
Swissprot | Q9STM4 | 1e-139 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A0B2PEA2 | 0.0 | A0A0B2PEA2_GLYSO; Zinc finger CCCH domain-containing protein 43 | ||||
STRING | GLYMA04G36670.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4156 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-126 | C3H family protein |
Publications ? help Back to Top | |||
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