PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05762.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 297aa    MW: 31113.5 Da    PI: 7.5889
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05762.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70278.32.1e-2416125272153
      DUF702  72 skrkrelkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                  kr+r    ++q+a+s+++ s+a+++k+l tss          lP +v+++avf+c rvs++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++
  KHN05762.1 161 CKRPRAVVGSSQNATSHSSNSNATTPKSLATSSfhqdasfkqsLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVQISGHVFKGFLYDHGVD 252
                 5777887778888888888888888888888878888888888***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.4E-23159252IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016245.1E-24204251IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSMLGLRDLV LIAQTPSSLH HQHQGQPISE NQTHTHTPNL PLPSSAASLS VGFGIFPLLT  60
ATPCVPQPHQ NNEVQECGGG GANSITTTTN YWNLKMCQEV NNPPKKGVIN VADHDDEKGV  120
MESEENGVYG PDFRVARGSP PFAAASARSR WGGGVGGNGG CKRPRAVVGS SQNATSHSSN  180
SNATTPKSLA TSSFHQDASF KQSLPGHVRA PAVFKCHRVS AIGNGEDEFA YLATVQISGH  240
VFKGFLYDHG VDGKTANVVP CVSELQLGNN CSGKNRECSS AIAIGVANNN AYPASAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05762.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358971e-133AC235897.2 Glycine max clone GM_WBc0123J08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578434.10.0protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_028228778.10.0protein LATERAL ROOT PRIMORDIUM 1-like
RefseqXP_028228779.10.0protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A0B2PDW40.0A0A0B2PDW4_GLYSO; Uncharacterized protein
STRINGGLYMA04G17885.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-22Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]