PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN05731.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 478aa MW: 53390.3 Da PI: 8.1632 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00013 | 8 | 28 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H KHN05731.1 8 CEICNKGFQRDQNLQLHRRGH 28 *******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.38E-7 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.11 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.824 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 74 | 48 | 78 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 71 | 102 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.38E-7 | 78 | 101 | No hit | No description |
SMART | SM00355 | 240 | 83 | 103 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKKRTNN DQVRKKVYVC PEKSCVYHDP 60 SRALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDWKA HSNCGTREYK CDCGTLFSRK 120 DSFITHRAFC DALAEESARV TTIPAALSNL RSDHHHHLTN AQASRIPQIF SGFHSSDQFG 180 GGSSEALLAN HHYQQKLRLP LWLDHHQVNN PQVLHHTLDN FSTEPSAFTS GTNSVPHDLV 240 QTMDMFGPQT QFVNYRYPEA SFGGGNANLS VLPPHGLKQE QEENKQHLSH SGASSNNLYL 300 SNSIQNPPHH HYMSATTLLQ KAVQMGSTRI SDNVFGSIVG TTNRNNNNNN NTNLEVQKLN 360 ELVSVEAGCN NNLGGGGDGY LLNDSFGVVN GTNKGLEHMV MPVDEETQQE SIVGNSLCSN 420 NKNQLGLTRD FLGVGDNNNN LDPIRRPFFQ QDLVEFNAMG SASASVMNLQ SQYGGHYC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-33 | 79 | 143 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 1e-33 | 79 | 143 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 45 | KLKKRTNNDQVRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN05731.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-108 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028194463.1 | 0.0 | zinc finger protein BALDIBIS-like | ||||
TrEMBL | A0A0B2P965 | 0.0 | A0A0B2P965_GLYSO; Zinc finger protein JACKDAW | ||||
STRING | GLYMA12G07510.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 2e-82 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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