PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN05704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 485aa MW: 53232.8 Da PI: 7.9057 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.1e-17 | 149 | 198 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g KHN05704.1 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.2 | 4.2e-13 | 241 | 291 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g KHN05704.1 241 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 291 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.95E-16 | 149 | 207 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-9 | 149 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-17 | 150 | 207 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 150 | 212 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.00E-11 | 150 | 208 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 150 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.29E-25 | 241 | 301 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-17 | 241 | 300 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-8 | 241 | 291 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-15 | 242 | 299 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-32 | 242 | 305 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.527 | 242 | 299 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-6 | 243 | 254 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-6 | 281 | 301 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 485 aa Download sequence Send to blast |
MNLNAEWTDS FSNGDSPFMS QKFPEGSRNQ MAESGTSNSS VVNADGSSNG GGDEDSCSTR 60 ADDVYTTFNF DILKVEGAND VVTKELFPVM SEGAKGHATS SFSARNGFVD LSFDREGGDS 120 EMKMLQPQTQ TQTQQPAKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 180 TAHAAARAYD RAAIKFRGVD ADINFNLSDY EDDLKQMKNL SKEEFVHILR RQSTGFSRGS 240 SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEVEAAR AYDKAAIKCN GREAVTNFEP 300 STYEGEMKSA AINEGGGQNL DLNLGIATPG PGPKENWGQL HFPSIPYNTH GGRSSKMETN 360 VNSGIGNPSL KRMVVTEDRP SLWNGMSPNF FPNGERAERI GIDPSKGLPN WAWQTHGQVN 420 ATPVPSFSAA ASSGFSISAT FPSTAIFPTS SMNSIPQSLC FTSSSSPTRN VSEYYYQVKP 480 PQAPP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN05704.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT031086 | 0.0 | KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028194612.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Swissprot | Q9SK03 | 1e-117 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A0B2PDX8 | 0.0 | A0A0B2PDX8_GLYSO; Ethylene-responsive transcription factor RAP2-7 | ||||
STRING | GLYMA12G07800.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2807 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-119 | related to AP2.7 |
Publications ? help Back to Top | |||
---|---|---|---|
|