PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05704.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 485aa    MW: 53232.8 Da    PI: 7.9057
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05704.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17149198155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  KHN05704.1 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198
                 78*******************......55************************997 PP

2AP241.24.2e-13241291155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  KHN05704.1 241 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 291
                 89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-16149207IPR016177DNA-binding domain
PfamPF008475.6E-9149198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-17150207IPR001471AP2/ERF domain
SMARTSM003803.3E-32150212IPR001471AP2/ERF domain
CDDcd000183.00E-11150208No hitNo description
PROSITE profilePS5103217.794150206IPR001471AP2/ERF domain
CDDcd000181.29E-25241301No hitNo description
SuperFamilySSF541717.85E-17241300IPR016177DNA-binding domain
PfamPF008471.3E-8241291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15242299IPR001471AP2/ERF domain
SMARTSM003802.5E-32242305IPR001471AP2/ERF domain
PROSITE profilePS5103215.527242299IPR001471AP2/ERF domain
PRINTSPR003675.2E-6243254IPR001471AP2/ERF domain
PRINTSPR003675.2E-6281301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MNLNAEWTDS FSNGDSPFMS QKFPEGSRNQ MAESGTSNSS VVNADGSSNG GGDEDSCSTR  60
ADDVYTTFNF DILKVEGAND VVTKELFPVM SEGAKGHATS SFSARNGFVD LSFDREGGDS  120
EMKMLQPQTQ TQTQQPAKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  180
TAHAAARAYD RAAIKFRGVD ADINFNLSDY EDDLKQMKNL SKEEFVHILR RQSTGFSRGS  240
SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEVEAAR AYDKAAIKCN GREAVTNFEP  300
STYEGEMKSA AINEGGGQNL DLNLGIATPG PGPKENWGQL HFPSIPYNTH GGRSSKMETN  360
VNSGIGNPSL KRMVVTEDRP SLWNGMSPNF FPNGERAERI GIDPSKGLPN WAWQTHGQVN  420
ATPVPSFSAA ASSGFSISAT FPSTAIFPTS SMNSIPQSLC FTSSSSPTRN VSEYYYQVKP  480
PQAPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05704.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310860.0KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028194612.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-117RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0B2PDX80.0A0A0B2PDX8_GLYSO; Ethylene-responsive transcription factor RAP2-7
STRINGGLYMA12G07800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-119related to AP2.7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]