PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05617.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 482aa    MW: 54277.6 Da    PI: 7.0917
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05617.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.47.2e-42180256177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +Cqv gC++dls+ k+yh+rhkvC++hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q
  KHN05617.1 180 VCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRRRLAGHNERRRKPQ 256
                 6**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.9E-34175242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.607178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-39179260IPR004333Transcription factor, SBP-box
PfamPF031101.5E-31181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MESWSYVPEE KGYLFSDEME FSLDAFMRSR KALVEWDNKS NFVERDGFNS DREVVKSMEF  60
VDLGFPDLLQ KSFHGSLPLE TSSYELDSNN SSKRGNSSTH VIALDSSMGE EESNSKHLSS  120
LVESKTQDSS LIDLKLGRLA DCKGASSDKV EKEGFTLTSI HPTTLSKRAR TSSLPAQAPV  180
CQVYGCNMDL SSSKDYHKRH KVCDAHSKTA KVIVNGIEQR FCQQCSRFHL LVEFDDGKRS  240
CRRRLAGHNE RRRKPQFDYM TGKQHKILQS YQGTKYLGSS LQNKPMFPFQ DIFQSSILFP  300
GKHAQISQSG RVKLEEDSIY SSQLTAPITL DQESSSCALS LLSDQSQYLS HHAACNPLTS  360
HRVFSGICIP NRDGQISETP LRISSADKHA PNESFPCNTT SKEVIKNRSA ATFSNTGHAL  420
RVHHGDDICQ PSELLDVKHH FSSEHAATVD LFQLSSHLQR VEQQRNSVLV KWENEDYCFP  480
TV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28172254284squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517860.10.0squamosa promoter-binding-like protein 6 isoform X2
RefseqXP_028231975.10.0squamosa promoter-binding-like protein 6 isoform X2
TrEMBLA0A0B2PD950.0A0A0B2PD95_GLYSO; Squamosa promoter-binding-like protein 6
TrEMBLK7K2720.0K7K272_SOYBN; Uncharacterized protein
STRINGGLYMA01G08056.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18193493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.13e-64SBP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]