PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05490.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 455aa    MW: 51444.2 Da    PI: 5.7976
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05490.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.65e-138284521374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++v++g+le+a+++L+++s laspdgd+mqR+a+yf+e La r++++++++ +al++++ +    s+e+ ++klf+e++P+lk++++++N
  KHN05490.1  28 LIHLLLSCANHVAAGNLENANTTLEQISMLASPDGDTMQRIATYFMESLADRILKTWPGIHRALNSTRMT--LISDEILVQKLFFELFPFLKVAFVLTN 124
                 689*************************************************************999987..69************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI ea+ege+ +HiiD+++ + +QW+aLl+ L++ pegpp+lRiTgv++    +ke l e+++rL++ Ae+l++pf+fn+ va++le+l++++Lrvk+
  KHN05490.1 125 QAIIEAMEGEKVIHIIDLNAAEAAQWIALLRVLSAHPEGPPHLRITGVHQ----KKEILDEVAHRLTEEAEKLDIPFQFNP-VASKLENLDFDKLRVKT 218
                 **************************************************....9**************************.7**************** PP

        GRAS 199 gEalaVnlvlqlhrll..............................................................desvsleserdevLklvksls 235
                 gEala++++lqlh+ll                                                              ++s+    + +++L+++++ls
  KHN05490.1 219 GEALAISSILQLHTLLawddeamqrksplllkssngihlqrvlpmgqstlgdllekdmvngytpspdstssspsslttSNSM----NMESFLNALWGLS 313
                 **********************************************************************998754222222....5578********* PP

        GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                 Pkv+vv+eq+++hn++++++r+leal+ y+alfd+le++++r+s er  vE++l+g+ei+n++aceg+er+erhe+lekW +r++ aGF++vpls++ +
  KHN05490.1 314 PKVMVVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMLFGEEIKNIIACEGSERKERHEKLEKWFQRFDLAGFGNVPLSYFGM 412
                 *************************************************************************************************** PP

        GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  qa++ l+ ++ +gyr+ +e+g+++++W+drp++s+SaWr
  KHN05490.1 413 VQARRFLQSYGCEGYRMRDENGCVLICWEDRPMYSISAWR 452
                 ***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.7392432IPR005202Transcription factor GRAS
PfamPF035141.7E-13528452IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MMSLSPSLGS PNNLLFREMK SEERGLYLIH LLLSCANHVA AGNLENANTT LEQISMLASP  60
DGDTMQRIAT YFMESLADRI LKTWPGIHRA LNSTRMTLIS DEILVQKLFF ELFPFLKVAF  120
VLTNQAIIEA MEGEKVIHII DLNAAEAAQW IALLRVLSAH PEGPPHLRIT GVHQKKEILD  180
EVAHRLTEEA EKLDIPFQFN PVASKLENLD FDKLRVKTGE ALAISSILQL HTLLAWDDEA  240
MQRKSPLLLK SSNGIHLQRV LPMGQSTLGD LLEKDMVNGY TPSPDSTSSS PSSLTTSNSM  300
NMESFLNALW GLSPKVMVVT EQDCNHNGPT LMDRLLEALY SYAALFDCLE STVSRTSLER  360
LRVEKMLFGE EIKNIIACEG SERKERHEKL EKWFQRFDLA GFGNVPLSYF GMVQARRFLQ  420
SYGCEGYRMR DENGCVLICW EDRPMYSISA WRSRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-42104541381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028194396.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A445HJP90.0A0A445HJP9_GLYSO; Scarecrow-like protein 3 isoform A
STRINGGLYMA12G02490.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]