PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN05467.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 275aa MW: 30724.4 Da PI: 7.8456

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN05467.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	7	56	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr N f eL +l ++ +K++Ka+iL +++ +k+L KHN05467.1 7 RKTQKADREKLRRDRFNVQFVELGNILDPD----RPKNDKATILGDTIQLLKDL 56 6788999******************997....79************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.144	6	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-11	6	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-12	6	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.72E-5	7	61	No hit	No description
Pfam	PF00010	2.4E-6	7	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-5	12	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDCTAARKTQ KADREKLRRD RFNVQFVELG NILDPDRPKN DKATILGDTI QLLKDLTSEV 60 SKLKDEYATL NEESCELAQE KNELREEKAS LKSDILKLNN QYQQQLRTVS PWTATDHSIM 120 LAPPSYPYPV PMPIPPAPIA MQPYPFYANQ HSAIIPNPCS TFVPYLVPNT LTEQRSTQYM 180 SPPVHPGFRS HVSGKQESRN KSSKESKAEK HEDSNDVTLT PGSSADQDLS SGQRKSSKLS 240 RKESSCTEVS SLDRCSLSCS VQDSSSSSVV HKHKG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN05467.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093559	0.0	BT093559.1 Soybean clone JCVI-FLGm-14O3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028192930.1	0.0	transcription factor bHLH121-like
Swissprot	Q9LT23	9e-77	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A445HJQ2	0.0	A0A445HJQ2_GLYSO; Transcription factor bHLH121
STRING	GLYMA12G02740.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-65	bHLH family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]