PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN05023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ZF-HD | ||||||||
Protein Properties | Length: 190aa MW: 21579.8 Da PI: 8.8372 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.6 | 2.6e-32 | 8 | 62 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rYkeClkNhAa++Gg+a+DGCgEfm++ geegt +alkC+AC+CHRnFHR+e e+ KHN05023.1 8 IRYKECLKNHAAAIGGNATDGCGEFMAA-GEEGTLEALKCSACNCHRNFHRKEIES 62 79*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-22 | 8 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.5E-29 | 8 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.3E-30 | 9 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.961 | 10 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-30 | 116 | 184 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.27E-19 | 119 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.0E-27 | 123 | 180 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEDKKIIIRY KECLKNHAAA IGGNATDGCG EFMAAGEEGT LEALKCSACN CHRNFHRKEI 60 ESSDSNAIPL MIIPDTTQII RPILAHLSPN KSGSISPSDL SDEKENEDGM MIKEVENPNE 120 KVKKRFRTKF TQEQKEKMLA FAERAGWRIQ KLDESLVQKF CQEIGIKRRV LKVWMHNNKN 180 TFAKRNPSTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-26 | 124 | 181 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN05023.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235423 | 0.0 | AC235423.1 Glycine max strain Williams 82 clone GM_WBb0137C18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555538.1 | 1e-141 | zinc-finger homeodomain protein 4 | ||||
Refseq | XP_028219678.1 | 1e-141 | zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 4e-64 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A445F8F6 | 1e-139 | A0A445F8F6_GLYSO; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | K7N4V5 | 1e-139 | K7N4V5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G35690.2 | 1e-140 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 3e-64 | homeobox protein 31 |
Publications ? help Back to Top | |||
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