PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05001.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 812aa    MW: 90591.6 Da    PI: 4.449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05001.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67.2e-066246611355
                 HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 R++i +++ eLr+l+P++     +K s  + L ++++Y+  Lq
  KHN05001.1 624 RQQIQDCIKELRRLIPND-----GKCSIDSLLDRTIRYMLFLQ 661
                 89***************9.....8999999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-1454145IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000836.56E-5608665No hitNo description
PROSITE profilePS5088811.376611660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-6624672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-4624666IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MTMPLTLRNK LKTLCTCGDG WSYAIFWRFH PRNSLLLTAE EAYYEEHLGE EIANMHPQVH  60
LLGEGIVGEA AFTGKHSWVH SDGLTHDWNL TGQNTCEDDS ELQQQFSSGI KTIVVVPVKA  120
WGVVQFGSRK KILEKVEFLE QTQSVLTEMD DDMGMFDMPG NAVLPLDCEN NDLNGFLDSI  180
SSASPNNSFP SQYNTYEESV ATLQGDSSYL GDQLKGTMEA LVVLSDRDSA DVLLKPNSST  240
NNLIAENPYF GVCGNELSSF DLLEQQLVSC VSAQEDADVC FTNENAFATS ELLGQDLALT  300
SLCSMDRGSF QGKLQNSLDN QYSTQSSVVT DVDFSSSLNA LHGLSENLER VDMSEEILKF  360
SSMEDLCQWF GPSPKDSICK AVIALDNTFS ESTEFNPTSF DLVGSSSLND ISVTCLTGQN  420
SNSEGKETSV VMHSTENALL DNLKLDFSYD QADEWWGNML TPVVSGVTDT GFSECISELN  480
TDIPTGTRKR LFSELGIDEL LRGEANYNPF NSSELEHELL PNKRQTVESS SVNRNSIPFT  540
NLHWPGVARA DLTQTFCDLD SANNLPTKKD KFPKLQTGMW NDDSHSINIG KAVPVHPQKP  600
EEPAKPPKKR ARAGESTRPR PKDRQQIQDC IKELRRLIPN DGKCSIDSLL DRTIRYMLFL  660
QSVVKYSDKL QEPNEPKLIE QANKVVLKDS GAADGKNCGI TWAYEVAHQP MLCPIIVEDM  720
SLPGQMLIEM LCEEQGFFLE IIDIIRHFGL NILKAKMERR RNKLWARFIV EANNRHVTRI  780
DVFLSLIRFL QQTNTSGIDS SNKNCDVIDA NI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221342.10.0transcription factor bHLH157-like
TrEMBLK7N4X70.0K7N4X7_SOYBN; Uncharacterized protein
STRINGGLYMA20G35921.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69551621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.15e-40conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]