PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04938.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 590aa    MW: 67951.5 Da    PI: 6.4414
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04938.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.71.8e-1997176286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W ++evlaL+++r++me+++ +       We+vs+k++e g++rs+++Ckek+e+ ++++ +i+ g++++++++ss+++++++le
  KHN04938.1  97 WNNDEVLALLRIRSSMESWFPEL-----TWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNINYGKNNNNNNNSSNYRFLSELE 176
                 ********************987.....9*****************************************************998 PP
2trihelix957e-30428516186
    trihelix   1 rWtkqevlaLiearr....emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k+evl+Li++r     + +++ ++g+ k plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  KHN04938.1 428 RWPKDEVLTLINLRCtsvnNNNNEEKEGNNKVPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 516
                 8************9843334444444689*********************************************8.9999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-1295177No hitNo description
PROSITE profilePS500906.12196148IPR017877Myb-like domain
CDDcd122032.71E-21427496No hitNo description
PfamPF138371.2E-19427517No hitNo description
PROSITE profilePS500906.214428489IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MFDGVPDQFH QFITPRTSLP LHLPFPLHTS GGTPNTTTFP SNFDPYNHPH QLPLQPNNLL  60
HPLHHKDEDK EENTTVPMNL EIQRDQRQQL PELIDPWNND EVLALLRIRS SMESWFPELT  120
WEHVSRKLAE LGYKRSAEKC KEKFEEESRY FNNINYGKNN NNNNNSSNYR FLSELEQLYH  180
QGGSGDHHLE NTTQPPLQKQ DKMGHHALEL EVEGDSRNVV DALVTKQNEQ SDEALAVEKI  240
TKDRKRKRPD RFEMFKCFCE SIVHKIMAQQ EEMHNKLLED MMKRDDEKFT REEAWKKQEI  300
EKMNKELEMM AREQAIAGDR QANIIQILNK FSATSSPASH TLKKVNNDSN LNIHITQNPN  360
PSQTENPTLS VAQDTLQVIP STSSTSTPAL PQNPSSYSLN IQNNNNNIPV ETNSVLNKGN  420
EKDDVGRRWP KDEVLTLINL RCTSVNNNNN EEKEGNNKVP LWERISQGML ELGYKRSAKR  480
CKEKWENINK YFRKTKDVNK KRSLDSRTCP YFHQLSSLYN QGKPVLQSES HLNSPPNQNP  540
EQVTPDQTTQ AHESSSQVGS GGGFSVQQQQ VDHGGEKTLM QVPSLDFDQF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04938.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2217540.0EF221754.1 Glycine max trihelix transcription factor (GT-2B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028222582.10.0trihelix transcription factor GTL2-like
TrEMBLA0A445F8W80.0A0A445F8W8_GLYSO; Trihelix transcription factor GTL2 isoform B
STRINGGLYMA20G36680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-95Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]