PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04930.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 332aa    MW: 35901.6 Da    PI: 6.392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04930.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09181225554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  KHN04930.1 181 HSIAERLRRERIAERMKALQELVPSiN------KTDRAAMLDEIVDYVKFL 225
                 99***********************77......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-15174235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-10174230No hitNo description
PROSITE profilePS5088816.126176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14178236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-7181225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-11182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAGNSGSEGL GDDFFEQILA VPEAGTVGML QLGSTTGAFR GASGLMPLGL NLEQAAFLRH  60
QVNVDDDVVH VNVDDATIHQ HHLTLHNNNN SSSPSSTAPI TDRDSMHMRG LFSAFGQLHT  120
PIRPTLPLPP PPRQPQLHLH HHNQQFQGQA AAAPASMAAM PQPPGIRPRV RARRGQATDP  180
HSIAERLRRE RIAERMKALQ ELVPSINKTD RAAMLDEIVD YVKFLRLQVK VLSMSRLGGA  240
GAVAQLVADV PLSAVEGDQD IEGGANEQAW DKWSNDGTEQ QVAKLMEEDV GAAMQFLQSK  300
ALCIMPISLA SAIFRMPQSE ASTGIKPESN SH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04930.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1416380.0BT141638.1 Lotus japonicus clone JCVI-FLLj-6C12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221723.10.0transcription factor UNE12-like isoform X1
SwissprotO227687e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLI1NIQ50.0I1NIQ5_SOYBN; Uncharacterized protein
STRINGGLYMA20G36770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]