PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04921.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 465aa    MW: 50634.7 Da    PI: 8.1464
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04921.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.1e-11181237155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  KHN04921.1 181 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 237
                 57*******************4444.2344336655.779999**************98 PP
2AP250.74.5e-16280331155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  KHN04921.1 280 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 331
                 57****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-9181237IPR001471AP2/ERF domain
CDDcd000186.43E-19181247No hitNo description
SuperFamilySSF541712.62E-15181247IPR016177DNA-binding domain
SMARTSM003802.3E-23182251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-13182246IPR001471AP2/ERF domain
PROSITE profilePS5103217.649182245IPR001471AP2/ERF domain
PRINTSPR003671.4E-6183194IPR001471AP2/ERF domain
PfamPF008472.3E-10280331IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-18280340IPR016177DNA-binding domain
CDDcd000181.60E-11280339No hitNo description
SMARTSM003806.0E-31281345IPR001471AP2/ERF domain
PROSITE profilePS5103219.164281339IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18281339IPR001471AP2/ERF domain
PRINTSPR003671.4E-6321341IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MARATNWLSF SLSPMEMLRT SEPQFLQYDA ASATSSHHYY LDNLYTNGWG NGSLKFEQNL  60
NHSDVSFVES SSQSVGHAHH HHGSSAYFGG DQQDLKAITG FQAFSTNSGS EVDDSASIGK  120
AQASEFGTHS IESSGNEFAA FSGGTTGTLS LAVALSSEKA VVAAESNSSK KIVDTFGQRT  180
SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQGGYDK EEKAARAYDL AALKYWGPTA  240
TTNFPVSNYS KEVEEMKHVT KQEFIASLRR KSSGFSRGAS IYRGVTRHHQ QGRWQARIGR  300
VAGNKDLYLG TFATEEEAAE AYDIAAIKFR GANAVTNFEM NRYDVEAIMK SSLPVGGAAK  360
RLRLSLESEQ KAPPVNSSSQ QQNPQCGNVS GSINFSAIHQ PIASIPCGIP FDSTTAYYPH  420
NLFQHFHPTN AGAAASAVTS ANATALTALP ASAATEFFIW PHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04921.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-103AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517351.10.0AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_028228416.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-166AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A0B2P6R40.0A0A0B2P6R4_GLYSO; AP2-like ethylene-responsive transcription factor AIL6
STRINGGLYMA01G02760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-147AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  3. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  4. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]