PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04774.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 265aa    MW: 29304.6 Da    PI: 8.7638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04774.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-1277123354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h ++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++ +k+L
  KHN04774.1  77 KSHRQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDQVKDL 123
                 79*************************8.....7***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.87574123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-1077123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-977126No hitNo description
SuperFamilySSF474595.5E-1277126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1377126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1080129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00567172207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVSIVTMENY YDSGWHMGTS NWAQCSDHSS SSSFAVPTQQ ILPHHVTDAA SLQFGEFHSW  60
SLPIEGAAEE RAISASKSHR QAEKRRRDRI NAQLATLRKL IPKSDKMDKA ALLGSVIDQV  120
KDLKRKAMDV SRAFTVPTEI DEVSIHHDHV LQDESCTEKV NKLKDNIVIK ASVCCDDRPE  180
LFPELIQVLK GLRLTAVKAD IASVGGRIKS ILVLCSKDSE SVCLATLKQS LKSAITKIAS  240
SSSMASSCPS RSKRQRFFLP SHCLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04774.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894760.0BT089476.1 Soybean clone JCVI-FLGm-2E23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028196213.10.0transcription factor bHLH51-like
SwissprotQ9XEF06e-48BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A0B2PB790.0A0A0B2PB79_GLYSO; Transcription factor bHLH51
TrEMBLA0A445HHF20.0A0A445HHF2_GLYSO; Transcription factor bHLH51
TrEMBLI1LMT10.0I1LMT1_SOYBN; Uncharacterized protein
STRINGGLYMA11G35480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.19e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]