PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04711.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 661aa    MW: 74136.5 Da    PI: 6.1839
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04711.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.73.4e-21119216198
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f+kvlt sd++++g +++ +k+a+e+     ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW++Fv +++L +gD++v       ++el+v
  KHN04711.1 119 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSNFVTSKRLVAGDTFVGN-----NGELRV 212
                 99****************************9555555679*******************************************98755.....566788 PP

                 EEE- CS
          B3  95 kvfr 98 
                 +v+r
  KHN04711.1 213 GVRR 216
                 8876 PP
2Auxin_resp90.72.5e-30242323183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pra  s+F+v+v+k+++a+++k+ vGmRfk +fe+++s+e  +r+sGt+vgv+d++p +W nS+WrsLk
  KHN04711.1 242 ASHAVATQTLFVVYYKPRA--SQFIVSVNKYLEAINQKCNVGMRFKTRFEGDESPEnyKRFSGTIVGVEDISP-HWVNSNWRSLK 323
                 789***************8..9********************************9844578**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-34110245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-33112231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-18117216No hitNo description
SMARTSM010192.4E-17119218IPR003340B3 DNA binding domain
PROSITE profilePS5086310.785119218IPR003340B3 DNA binding domain
PfamPF023628.4E-19119215IPR003340B3 DNA binding domain
PfamPF065078.4E-29242323IPR010525Auxin response factor
PfamPF023099.1E-12513638IPR033389AUX/IAA domain
PROSITE profilePS5174525.028551632IPR000270PB1 domain
SuperFamilySSF542775.89E-13554627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MSLNRGGGGE EDELYEQLWK ACAGPHVEVP RTGQRVFYFP QGHMEQLEVS TNQELNQRIP  60
LFKLPSKILC RVVNVHLLAE QETDEVYAQI TLVPESNQAE PMSPDPCPAE LPSPRVHSFC  120
KVLTASDTST HGGFSVLRKH ATECLPALDM SKSTPTQELV AKDLQGYEWR FKHIFRGQPR  180
RHLLTTGWSN FVTSKRLVAG DTFVGNNGEL RVGVRRIAPV QSSMPSSVIS SQSMHLGVLA  240
TASHAVATQT LFVVYYKPRA SQFIVSVNKY LEAINQKCNV GMRFKTRFEG DESPENYKRF  300
SGTIVGVEDI SPHWVNSNWR SLKVQWDEPA SFPRPDRVLP WEIEPILASV PTTSSQTAAI  360
KNKRPRQASE LADLGDTPLA FPTFWDAGLT QSDMAKLSVM AEIKRSDSSS HMWHHNSKSS  420
NNGISMNQTE ASWLSSPSQL YHDTTDDSKS ISAWPISKPH SERLNNDHFL DQVDKEINKV  480
EAATSYRLFG IDLIDHARNN SLSAENASGI TSECKIDVNH VSDISKASKE WNQEQLQLSP  540
KETQSKQVCS RSCTKVQMQG VAVGRAVDLT TLDGYDQLVD ELEKMFDIKG QLQLRNKWEI  600
VFTDDEGDMM LVGDDPWLEF CKMVRRIFIY SSQDVHKLSS GSKLPISSME EIVTSLDTTE  660
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-15923467355Auxin response factor 1
4ldw_A1e-15923467355Auxin response factor 1
4ldw_B1e-15923467355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04711.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-142AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552183.10.0auxin response factor 9 isoform X1
RefseqXP_028214238.10.0auxin response factor 9-like isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0B2P6550.0A0A0B2P655_GLYSO; Auxin response factor
STRINGGLYMA18G40180.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]