PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04680.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 609aa    MW: 66885.9 Da    PI: 7.0079
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04680.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-094084451954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  KHN04680.1 408 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 445
                 554459******************************88 PP
2BELL103.41.6e-33282348672
        BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +kk++Ll++l+eV++rY+qy++q+q+v+ sFe v gl +a+pY+slA ka+S+hFrcLk+ai++qi
  KHN04680.1 282 GRKKSRLLTMLDEVYRRYRQYYQQMQAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQI 348
                 68****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.5E-45221346IPR006563POX domain
PfamPF075262.9E-37226345IPR006563POX domain
PROSITE profilePS5007112.098386449IPR001356Homeobox domain
SMARTSM003893.4E-10389453IPR001356Homeobox domain
CDDcd000861.29E-12389450No hitNo description
SuperFamilySSF466894.11E-17391456IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27392453IPR009057Homeodomain-like
PfamPF059201.1E-18406445IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MAEGFEAYHV PQQSRRDKLR VVATQNQHGL VEPSSLLPLY DPSSFISSDL LTSFHNGQKH  60
NLGCGMKEER ANLMMGFAAA AGGGGVMNNG SSSSCCSSNS SSVSYLDPES SLPLNQATIQ  120
VINNSNNNNM FLYQAQNLRE FDQGYNNNNN NNSEIMVFKP EPLSLSLSSH NNGVNLQRYG  180
SVVYGDKVGG VGGGGGGGVV IYGGSGLNEV SRCTVPMGPF TGYASILKGS RFLKPAQQLL  240
EELCDVGGVC AEKIVADASL MEPIPPESSS EDPLGDHGGD QGRKKSRLLT MLDEVYRRYR  300
QYYQQMQAVV TSFEYVSGLS NAAPYASLAI KAMSKHFRCL KNAITDQIQF ANKAHFHISN  360
RKDESPRFGN SDRGPYGQRP GFLEHQPVWR PQRGLPERAV TVLRAWLFEH FLHPYPTDTD  420
KLMLAKQTGL SRSQVSNWFI NARVRLWKPM VEEIHMLETR QAPKNLQKEE HCTNKPSDHL  480
PSDNSIVSEN PSTSTDKFQE APYKRAINEL PNIPVRTQEQ LNLPCTSNQP GGVGVSMGGS  540
ASNSVSLTLG LYQNHGIGLA EPFPLNAAQR FGVALETNNE GYVMSDYESQ NRHFGRDVIG  600
GQLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16395452158Homeobox protein Meis1
4xrs_B2e-16395452158Homeobox protein Meis1
5bng_A2e-16395453159Homeobox protein Meis2
5bng_B2e-16395453159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0953250.0BT095325.1 Soybean clone JCVI-FLGm-19C14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516903.10.0BEL1-like homeodomain protein 9
RefseqXP_028235392.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-122BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A0B2P5Y20.0A0A0B2P5Y2_GLYSO; BEL1-like homeodomain protein 9
TrEMBLK7K3120.0K7K312_SOYBN; Uncharacterized protein
STRINGGLYMA01G25710.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-105TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  4. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  5. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  6. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  7. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  8. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]