PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04669.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 451aa    MW: 49681.9 Da    PI: 6.9238
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04669.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.4e-29201258359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg++WrKYGqK+ kg+++pr+YYrC++   Cpv+k+v+r+ +d++v+++tYeg+Hnh+
  KHN04669.1 201 DGCQWRKYGQKTAKGNPCPRAYYRCSMGtACPVRKQVQRCFKDETVLITTYEGNHNHP 258
                 9**************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-31184260IPR003657WRKY domain
SuperFamilySSF1182904.45E-26193260IPR003657WRKY domain
PROSITE profilePS5081127.737194260IPR003657WRKY domain
SMARTSM007742.4E-33199259IPR003657WRKY domain
PfamPF031062.0E-25201258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEDKAAIKEL LEDEENPYDN TMGSTLLSLS LNNSGQPLNQ MGMLRIKLEE AKKENEILKA  60
MLNQVNQHCT ALQNRILFEM QQHQLCSSSP RNDNNNHDLQ GNKQDAEKLP MLHTRQFLNM  120
GESSSILDGN TKACAIAENA EKKMLGKNLA CDDNKYNVEG EINSQITSHE AKSTEDQVSE  180
VTCRRARVSI RARSDFSSMF DGCQWRKYGQ KTAKGNPCPR AYYRCSMGTA CPVRKQVQRC  240
FKDETVLITT YEGNHNHPLP PAARPLASST SAALNMFLSG SITSSHSSTI LPNSPLSTIS  300
PSTAVATFSQ NATCPTVTLD LTQPNNNNYL QFQSATTSSQ DHTQSFFPLP LHGNPQNYSE  360
GLMHLWSKVP IPTMLAPEKN LALVDVVSEA INKDPSLKAA LFSAISSLTG DPDQKDNINN  420
ISQLHSKSSG GYDPCSKMPA IPPIQPYTKL I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21186262176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434641e-109BT143464.1 Lotus japonicus clone JCVI-FLLj-21J12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202627.10.0WRKY transcription factor 42-like
TrEMBLA0A0B2PAS90.0A0A0B2PAS9_GLYSO; Putative WRKY transcription factor 42
STRINGGLYMA15G20990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-52WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]