PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04570.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 309aa    MW: 34043.2 Da    PI: 6.6725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04570.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.000611992371255
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  KHN04570.1 199 RKEKLGERITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 237
                 5667778888888888887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.28187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.52E-6197241No hitNo description
SuperFamilySSF474593.79E-10197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-7197244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNRGVLQSSP VQQMMTGNPN WWNININSMA PQAPPFLSTP NNFPIPCAPT SLPFPSWHEN  60
QDLPESWSQL LMSGVVDEQG KAGMGQFIQT KKLESWEDQM LGQAPNASLV DVKQENLVNS  120
YAYGHGSEEL QSSKPSWSPK SCVTTSFSSN MLDFSNNKTD ARHPPPDLSS ECNSTAAGGA  180
LKKARVQPSA TTQTTFKVRK EKLGERITAL HQLVSPFGKT DTASVLLEAI GYIRFLQSQI  240
EALSLPYLSG GSGNTRQQHS VQGEKRCIFP EDPGQLLDEN CLKRKAAGEP DTQEEPKKGL  300
RSRKERPEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938720.0BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028239744.10.0transcription factor bHLH68-like
SwissprotQ8S3D14e-77BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A445JU180.0A0A445JU18_GLYSO; Transcription factor bHLH68 isoform A
STRINGGLYMA07G09180.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]