PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN04511.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 25763.6 Da PI: 10.0151 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.4 | 8.1e-16 | 131 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+k +++s+ + +l lp +f++++ + ++ +tl de+g+++ + rk++ l++GWk+F+ ++L +gD v+F+l++++ f +v ++ KHN04511.1 131 FIKSMLQSHISGGFWLGLPVHFCKSNlpK----GDEVMTLIDEDGNEYPTIYLARKTG----LSGGWKGFAVGHDLADGDAVIFQLIKHTAF--KVYII 219 89*********************999543....4458***************656665....*************************98888..88888 PP -S CS B3 98 rk 99 r+ KHN04511.1 220 RA 221 86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-20 | 124 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-24 | 125 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-25 | 129 | 220 | No hit | No description |
SMART | SM01019 | 9.3E-23 | 131 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-13 | 131 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.167 | 131 | 222 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MVAAIAYEES RRKRVEENRK RMEALNLPLL SQALHKSPSP KSSPLKQVKN RTIQKELVVV 60 RRSSRVANLP TPVYKEVVVD RVTIPRRTLG RPYNRHRDYA NRVYASDEAR EEALEKAETL 120 MSGLESEHPA FIKSMLQSHI SGGFWLGLPV HFCKSNLPKG DEVMTLIDED GNEYPTIYLA 180 RKTGLSGGWK GFAVGHDLAD GDAVIFQLIK HTAFKVYIIR ANSPPEDK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN04511.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523918.1 | 1e-169 | B3 domain-containing protein At5g42700 | ||||
Refseq | XP_028227628.1 | 1e-169 | B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 5e-75 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A445KV91 | 1e-168 | A0A445KV91_GLYSO; B3 domain-containing protein | ||||
TrEMBL | I1JTI3 | 1e-168 | I1JTI3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G04030.1 | 1e-169 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-74 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|