PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN04224.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 317aa MW: 34878.9 Da PI: 7.7559

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN04224.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.0004	184	222	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq KHN04224.1 184 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 222 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.706	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-10	182	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.57E-6	182	226	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.3E-7	186	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MMAGNPNWWT MHPPSLIPPQ YVLGSSSIPF NSSTQNQEPP HSLSQLLFTG LPGEEERVAF 60 SHFQSKKLDE WNEQMLNPSS IVPMADVIKQ EVSQSGNLYH HGHDQEFQVS GAPWSHMVPV 120 SSSPRSSVAS FSSNNLLDFT YNKTDHRKNQ LPDHTSECNS TATGGVYKKT KSQPSSSQPP 180 LKVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF LQGQIEALSS PYLGNGSKNM 240 RNPQSVHGER NSVFPEDPGQ LLNDNGLKRK GAPNQDAKDK PRDLKSRGLC LVPVSCTQHV 300 GNENGADYWA PAYGSGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN04224.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	9e-99	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006583063.1	0.0	transcription factor bHLH68 isoform X2
Refseq	XP_028238923.1	0.0	transcription factor bHLH68-like isoform X2
Swissprot	Q8S3D1	2e-69	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0B2P9I4	0.0	A0A0B2P9I4_GLYSO; Transcription factor bHLH68
TrEMBL	I1KGL9	0.0	I1KGL9_SOYBN; Uncharacterized protein
STRING	GLYMA07G02120.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-66	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]