PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04199.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 287aa    MW: 32729.9 Da    PI: 6.6436
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04199.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.37.8e-133086155
         AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  KHN04199.1 30 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQSKKGRQGAYDDEEAAARAYDLAALKYWG 86
                57*******************99998888888888********************98 PP
2AP2538.4e-17129180155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  KHN04199.1 129 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRG 180
                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-163096IPR016177DNA-binding domain
PfamPF008479.1E-93086IPR001471AP2/ERF domain
SMARTSM003804.3E-2231100IPR001471AP2/ERF domain
PROSITE profilePS5103219.0193194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-133196IPR001471AP2/ERF domain
PRINTSPR003672.8E-63243IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18129190IPR016177DNA-binding domain
CDDcd000186.44E-15129190No hitNo description
PfamPF008472.4E-12129180IPR001471AP2/ERF domain
SMARTSM003803.2E-24130194IPR001471AP2/ERF domain
PROSITE profilePS5103218.268130188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17130189IPR001471AP2/ERF domain
PRINTSPR003672.8E-6170190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAKKSQKSLN STGKRTRKSV PRDSPPQRSS IYRGVTRHRW TGRYEAHLWD KNCWNESQSK  60
KGRQGAYDDE EAAARAYDLA ALKYWGQDTI LNFPLSNYEE KLKEMEGQSK EEYIGSLRRK  120
SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAAA YDMAAIEYRG  180
LNAVTNFDLS RYINWPRPKT EENHQTIPSN ENVNSNAELE LGSASDEITE EGVAPSSESN  240
PSRRTFPEDI QTIFENQDSG IYTENDDIIF GDLGSFGAPI FHYELDV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04199.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583078.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
RefseqXP_028238961.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-119AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0B2P9F10.0A0A0B2P9F1_GLYSO; AP2-like ethylene-responsive transcription factor
TrEMBLA0A0R0IYE80.0A0A0R0IYE8_SOYBN; Uncharacterized protein
STRINGGLYMA07G02380.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-108ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]