PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04162.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 354aa    MW: 37935.3 Da    PI: 10.0497
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04162.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.77.2e-4370146177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +Cqv gC++dls ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh lsefD++krsCr+rLa+hnerrrk+ 
  KHN04162.1  70 RCQVAGCKVDLSGAKAYYSRHKVCAMHSKSPTVTVAGLEQRFCQQCSRFHLLSEFDQGKRSCRKRLAGHNERRRKPP 146
                 6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.0E-3564132IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.94968145IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-4069150IPR004333Transcription factor, SBP-box
PfamPF031107.8E-3371144IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGSASVTKAP PSSSSSPNSS STESLDGLKF GQKIYFEAAA AATTTQGGNK TRGGVSASKK  60
GRGGSVQAPR CQVAGCKVDL SGAKAYYSRH KVCAMHSKSP TVTVAGLEQR FCQQCSRFHL  120
LSEFDQGKRS CRKRLAGHNE RRRKPPPSSI LTSRYGRLSV PIFDNNGRDD GFLMEFASYP  180
KLTLRNTLPT QRSTEPAPGN HAATLTWQGG SDTPSEFFLQ GSGSSGGTSF LSSKHPLVES  240
YTGVTDSNCA LSLLSSQTWG SRNTAPATSF ELNNNLFNFN GTSMTQFAVA SLQAAAIHQL  300
PNATSWLYLK GVDSGNCSPE RVPNHGLAQI SPPLHSHVHS ELDVSQQGRR HYMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-30711441184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04162.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354864.10.0squamosa promoter-binding-like protein 9a
SwissprotA3C0575e-58SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A0B2P9660.0A0A0B2P966_GLYSO; Squamosa promoter-binding-like protein 17
STRINGGLYMA02G30670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-50squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]