PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04157.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 199aa    MW: 22480.4 Da    PI: 8.3362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04157.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-18756255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr+++ +g+Wv+eIr p        +r++lg+f tae+Aa+a+++a++ + g
  KHN04157.1  7 RYRGVRQRH-WGSWVSEIRRP-----IlkTRIWLGTFETAEDAARAYDEAARLMCG 56
                69******9.**********8.....556**********************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.15E-34664No hitNo description
SuperFamilySSF541711.05E-20765IPR016177DNA-binding domain
PfamPF008476.2E-12756IPR001471AP2/ERF domain
SMARTSM003802.9E-38770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-33764IPR001471AP2/ERF domain
PROSITE profilePS5103221.022764IPR001471AP2/ERF domain
PRINTSPR003673.3E-11819IPR001471AP2/ERF domain
PRINTSPR003673.3E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRRPILKT RIWLGTFETA EDAARAYDEA ARLMCGARAR  60
TNFPFNPNVP HSSSSSSKLL SATLTAKLHS CYMASLQITR QALECESQRT PSVPNATSTT  120
TLFSNFSVRS EQTPAVLPHK RPEEEQESEA NRGGKRVKAV ENVPLQFKPL EEDHIEQMIE  180
ELLDYGSIEL CSVIPPQAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17668467ATERF1
3gcc_A2e-17668467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04157.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028200131.11e-147ethylene-responsive transcription factor ERF003-like isoform X2
SwissprotQ94AW52e-73ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0B2P9611e-146A0A0B2P961_GLYSO; Ethylene-responsive transcription factor ERF003
STRINGGLYMA14G13470.21e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]