PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN04014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 319aa MW: 35763.2 Da PI: 6.3737 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.4e-13 | 125 | 176 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ KHN04014.1 125 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 176 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.8E-14 | 123 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.07E-13 | 123 | 180 | No hit | No description |
PROSITE profile | PS50888 | 15.402 | 124 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-16 | 124 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 125 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.6E-10 | 130 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MALEAVVYPQ PQDPFGHGIK DPSYNYNNLL EGGGGNWGYA DFNLEKEDRT CVPFLANQTE 60 NYPYGEWNCS PSPPSMLPQL NIASNPQSSE TSNTQNNLDS SVSTPARPKR RRTKSRKNKE 120 EIENQRMTHI AVERNRRKQM NEYLSVLRSL MPESYVQRGD QASIIGGAIN FVKELEQRLQ 180 FLGAQKEKEA KSDVLFSEFF SFPQYSTSAS GGCDNSTAMS EQKCEAQSGI ADIEVTMVES 240 HANLKIRSKK RPKQLLKIVS SLHGMRLTIL HLNVTTTGEI VLYSLSVKVE EDCKLGSVDE 300 IAAAVYQILD RIQQETISN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 136 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN04014.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-141 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006577251.1 | 0.0 | transcription factor bHLH94 | ||||
Refseq | XP_028226606.1 | 0.0 | transcription factor bHLH94-like | ||||
Swissprot | Q9C7T4 | 7e-82 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A445LGF1 | 0.0 | A0A445LGF1_GLYSO; Transcription factor bHLH96 isoform A | ||||
TrEMBL | I1JRF0 | 0.0 | I1JRF0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G39990.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 5e-80 | bHLH family protein |
Publications ? help Back to Top | |||
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