PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03949.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 79aa    MW: 8927.49 Da    PI: 9.8706
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03949.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.2e-191245134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                C+ C+ttkTplWR gp g+ktLCnaCG++yrk++
  KHN03949.1 12 CADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRR 45
                ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.9E-14660IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.545642IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-13746No hitNo description
Gene3DG3DSA:3.30.50.103.0E-151045IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.9E-171245IPR000679Zinc finger, GATA-type
CDDcd002026.33E-121245No hitNo description
PROSITE patternPS0034401237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016740Molecular Functiontransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MDLNVNEKKK CCADCKTTKT PLWRGGPAGP KTLCNACGIR YRKRRACSRK REEQRWKMLG  60
EEEQAAVCLM ALSSGFVFA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495606.18e-40GATA transcription factor 16
SwissprotQ9FJ109e-26GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A445LG494e-51A0A445LG49_GLYSO; GATA transcription factor 16 isoform A
TrEMBLI1JR724e-51I1JR72_SOYBN; Uncharacterized protein
STRINGGLYMA03G39220.17e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-14GATA transcription factor 16
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]