PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN03874.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 133aa MW: 15083.8 Da PI: 4.8859 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.5 | 2.2e-15 | 15 | 61 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50 ++y+GVr+++ +g+++AeIrdp + +r++lg+f taeeA +aa ++r KHN03874.1 15 PRYRGVRRRP-WGKFAAEIRDPAR---HgARVWLGTFLTAEEADRAAYEMR 61 68********.**********943...24*****************98877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.99E-23 | 15 | 71 | No hit | No description |
Pfam | PF00847 | 1.2E-10 | 15 | 61 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-25 | 16 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.479 | 16 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-27 | 16 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-17 | 16 | 71 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.9E-10 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 133 aa Download sequence Send to blast |
MEEESKEKRD TKGEPRYRGV RRRPWGKFAA EIRDPARHGA RVWLGTFLTA EEADRAAYEM 60 RGALAVLNFP NEYPSCSSMS SSSTLAPSSS SSNSMLKNDH GKQVIEFECL DDKLLEDLLD 120 CDDYAYEKDL PKN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-29 | 16 | 114 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN03874.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536938.1 | 7e-58 | ethylene-responsive transcription factor ERF096 | ||||
Refseq | XP_028182620.1 | 7e-58 | ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 2e-35 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A445IHH2 | 2e-56 | A0A445IHH2_GLYSO; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | I1L8D2 | 2e-56 | I1L8D2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G04160.1 | 3e-57 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22365 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-29 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|