PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03857.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 504aa    MW: 54994.2 Da    PI: 5.7023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03857.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11356402455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  KHN03857.1 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 402
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-4351227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.259352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-17355418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-13355406No hitNo description
Gene3DG3DSA:4.10.280.104.4E-17356421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.63E-4436504No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MVGEKFCVSE DDKGVLESVL GAEAVAFFIS ALSNNVFSRV VAPSAGADPA LRQRLCQLVE  60
GSKWNYAVFW QVAGLKSGGS ALVWGDGHCS DPKGERNGVG KEDEQEVRKK VLQKLDACFG  120
GSLLKDANHV RLDRVSELLM FYLSSMCYIF GFDSLCGPGS SFKSGKFIWA SDAAGCLNQL  180
ESRSFLGKLA GLHTVVFVPL KSGVVELGSF EMVPEEQGVV EMVRTAFGES SPGQAKVFPK  240
IFGHELSLGD TKSQSITISF SPKVEDDPGF TSDSYEVQAL GVNHAYGNSS NGTLGDGNEG  300
TLFPQLNQMM AGNFNAQARV PCLDLGNEDS SSIHADERKP KKRGRKPANG REEPLNHVEA  360
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITFITD LQMKIKVLEA EKNMGNNKDQ  420
KLSLPDMDFQ EREDDTVVTV RCPLDIHPVS NVVKTFREHQ IVAQDSNVST ADDKIIHTFS  480
IRTEGGEAAA IQLKEKLEAS LSKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-28350424276Transcription factor MYC2
5gnj_B5e-28350424276Transcription factor MYC2
5gnj_E5e-28350424276Transcription factor MYC2
5gnj_F5e-28350424276Transcription factor MYC2
5gnj_G5e-28350424276Transcription factor MYC2
5gnj_I5e-28350424276Transcription factor MYC2
5gnj_M5e-28350424276Transcription factor MYC2
5gnj_N5e-28350424276Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337345RKPKKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03857.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588664.10.0transcription factor bHLH3
RefseqXP_006588665.10.0transcription factor bHLH3
RefseqXP_028184238.10.0transcription factor bHLH3-like
RefseqXP_028184239.10.0transcription factor bHLH3-like
SwissprotA0A3Q7H2161e-175MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A445IHK50.0A0A445IHK5_GLYSO; Transcription factor bHLH3 isoform A
TrEMBLI1L8B70.0I1L8B7_SOYBN; Uncharacterized protein
STRINGGLYMA10G03950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-155bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]