PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03847.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 373aa    MW: 41853.1 Da    PI: 10.2784
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03847.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.51e-26290342354
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg 54 
                 D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYe 
  KHN03847.1 290 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEA 342
                 99***********************9988**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.4E-17241286IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-28276342IPR003657WRKY domain
PROSITE profilePS5081126.211283349IPR003657WRKY domain
SuperFamilySSF1182908.5E-23286342IPR003657WRKY domain
SMARTSM007742.7E-28288342IPR003657WRKY domain
PfamPF031063.0E-22290341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEEVEQANRV AVESCHRVLS LLSQPRDQVQ HRNLMVETGE TVVRFKKVVS MLHNGLGHAR  60
VRKLKNPQIP SSHQSIFLDN PNCKTLTNNN NNNHHSKKNL YFPQTSYPDN SVQEHGSTIK  120
NSLSLGQPSL ELSSNGKSPL HLTQQGSSNH YHFFQQQQQQ RLLQQQQQQQ QIKHQAEMLF  180
RRNNSGINLN FDSTSCTPTM SSTKSFISSL SIDGSVANLD GSAFHLIGAP HSSDQNSQQP  240
KRKCSARGDE GSLKCGSSAR CHCSKKRKHR VKRAIKVPAI SNKLADIPPD DYSWRKYGQK  300
PIKGSPHPRG YYKCSSMRGC PARKHVERCL EEPTMLIVTY EAWANSRKKH GMAPASDNGW  360
QQSLGEMNGT PSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-172843551076WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03847.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312370.0KT031237.1 Glycine max clone HN_CCL_17 WRKY transcription factor (Glyma10g03820.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028185161.10.0probable WRKY transcription factor 21
SwissprotO043361e-115WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A445IHA40.0A0A445IHA4_GLYSO; Putative WRKY transcription factor 21 isoform A
STRINGGLYMA10G03820.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-106WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]