PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03741.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 420aa    MW: 44948.5 Da    PI: 8.6597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03741.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-114975127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++ ++C +++rtG C yG+rC+++H++
  KHN03741.1 49 PGVPNCVYYMRTGVCGYGSRCRYNHPR 75
                5789*********************96 PP
2zf-CCCH36.96.1e-12101126227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++++tG+Ck+G +CkF+H++
  KHN03741.1 101 GEKECSYYLKTGQCKFGISCKFHHPQ 126
                 6789********************97 PP
3zf-CCCH35.22.1e-11257283127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++++rtG Ck+G  C+++H++
  KHN03741.1 257 PGEPECQYYLRTGDCKFGLACRYHHPR 283
                 5799*********************96 PP
4zf-CCCH34.63.1e-11302326226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +  +C f++++G+Ck+G++CkF H+
  KHN03741.1 302 GVQPCAFYLQNGHCKFGSTCKFDHP 326
                 6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.7044876IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-64875IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249100127IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9101126IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5102127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4105125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624256284IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5256283IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-9258283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5260284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.385300328IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6300327IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-9302326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6302331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5304325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDLYGRGQAR NGSNPVNQPE WRSPGTDTGL EESMWHLTLG GGESYPERPG VPNCVYYMRT  60
GVCGYGSRCR YNHPRDRAAV AAAVRVTGDY PERVGEPPCQ GEKECSYYLK TGQCKFGISC  120
KFHHPQPAGT SLPTSAPQFY QQVQSPTVPL PEQYGGASTS LRVARPPVLP GSYVQGAYGP  180
VLLSPGVVQF PGWSHYSAPV SPVLSPGAQP TVGATSLYGV TQLSSPTSAF ARPYTPLSST  240
TGPSGSNLKD QFFPERPGEP ECQYYLRTGD CKFGLACRYH HPRDHIVARP LLSPVGLPLR  300
PGVQPCAFYL QNGHCKFGST CKFDHPLGST RYTPWVSSFI DVPVTPYPVG SLLSQLAPST  360
TSSELRPELM SGSKKESLAA RISSSGNSSG TSVGLIFSQG GSVSLSNVQL SSQSSAPSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03741.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618380.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-168C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A445IGS60.0A0A445IGS6_GLYSO; Zinc finger CCCH domain-containing protein 32 isoform A
TrEMBLI1L7X30.0I1L7X3_SOYBN; Uncharacterized protein
STRINGGLYMA10G02550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-154C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]