PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN03738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 224aa MW: 25270.6 Da PI: 8.6738 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19 | 3.7e-06 | 27 | 47 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C++C+k F r+ nL+ H r KHN03738.1 27 FVCEICNKGFQRNQNLQLHRR 47 89*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 26 | 47 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.22E-5 | 27 | 48 | No hit | No description |
PROSITE profile | PS50157 | 9.598 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDEIHVTDPN AEVIALSPTT LMATNRFVCE ICNKGFQRNQ NLQLHRRGRN PPWKLRQRGS 60 NELMKKRVYV CPEPSCVHHN PARALGDSTG IKKITADNMV KRNGSVTNAL EDMLSNLTGR 120 PTRKHVALGN TNVIGEPYFP SDHNEGLMKN VEQEIGTGNS SLVHDFLGVG GATSRVHEPQ 180 NQKQQQQRLE LDTLTHQRLQ IMNHFHHHLP HGDSATMEKS IWDI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN03738.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-142 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028184244.1 | 1e-101 | protein indeterminate-domain 12-like | ||||
TrEMBL | A0A445IH88 | 1e-167 | A0A445IH88_GLYSO; Protein indeterminate-domain 11 | ||||
STRING | GLYMA10G02501.1 | 6e-66 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 1e-45 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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