PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03576.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 277aa    MW: 30945.8 Da    PI: 7.5688
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03576.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.79.9e-3272128259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  + vrY+eClkNhAa++Gg+a+DGCgEfmps g+eg+++al+C+AC CHRnFHR+eve 
   KHN03576.1  72 KVVRYRECLKNHAAAMGGNATDGCGEFMPS-GKEGSIEALNCSACHCHRNFHRKEVEG 128
                  679**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.8E-2874126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2474129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.0E-3075126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.03276125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.5E-29190259IPR009057Homeodomain-like
SuperFamilySSF466898.97E-18191259IPR009057Homeodomain-like
TIGRFAMsTIGR015657.8E-26198254IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MELSSQEGEI PIPINSSTTY GHGNGHGHGH GHGLMIHHDH NHIISSSAPS NGIPTTMQQQ  60
EEEEEEEDRY KKVVRYRECL KNHAAAMGGN ATDGCGEFMP SGKEGSIEAL NCSACHCHRN  120
FHRKEVEGEP QHHLNINRRR LILGPHPEAL GYPHQMIMPY NIGIGHHLPS ESDEQEDAAA  180
GAGMVQLSSR PSSAQLVKKR FRTKFSQDQK DKMLNFAEKV GWKIQKQEES VVQHFCQEIG  240
VKRRVLKVWM HNNKHNLAKK INPPTTTAPP PPPPPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-221972561675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03576.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-74AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550152.11e-167zinc-finger homeodomain protein 4
RefseqXP_028209571.11e-167zinc-finger homeodomain protein 4-like
SwissprotQ9M9S06e-73ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A445G0361e-166A0A445G036_GLYSO; Zinc-finger homeodomain protein 4
TrEMBLI1MQT91e-166I1MQT9_SOYBN; Uncharacterized protein
STRINGGLYMA17G00590.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-75homeobox protein 31
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]