PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN03468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 180aa MW: 20992.4 Da PI: 10.0343 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.6 | 6.7e-23 | 22 | 69 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + e sn+qvtfskRr+g++KKA+EL++LC+a va+i+fs+ +kl+ + KHN03468.1 22 KLEKASNKQVTFSKRRTGLFKKASELCILCNAYVAIIVFSPADKLFCF 69 56889***************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.8E-32 | 13 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.763 | 13 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-27 | 14 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-21 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-22 | 23 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-21 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-21 | 50 | 71 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MDMFKQNQKK KNTGRKKIEI KKLEKASNKQ VTFSKRRTGL FKKASELCIL CNAYVAIIVF 60 SPADKLFCFG HPDIDSIIGR YLKGDNNAEF EPAAKSSKEK SVSYEECNRQ YEAATKKLEL 120 EKKNLAQTEI LAKGWNRRWW KDPIDQMSEQ QLEQFMMSIY ELRKKLTERT GELMMLGTMT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-16 | 14 | 81 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-16 | 14 | 81 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-16 | 14 | 81 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-16 | 14 | 81 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6byy_A | 2e-16 | 14 | 81 | 2 | 69 | MEF2 CHIMERA |
6byy_B | 2e-16 | 14 | 81 | 2 | 69 | MEF2 CHIMERA |
6byy_C | 2e-16 | 14 | 81 | 2 | 69 | MEF2 CHIMERA |
6byy_D | 2e-16 | 14 | 81 | 2 | 69 | MEF2 CHIMERA |
6c9l_A | 2e-16 | 14 | 81 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-16 | 14 | 81 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-16 | 14 | 81 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-16 | 14 | 81 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-16 | 14 | 81 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-16 | 14 | 81 | 2 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN03468.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028210616.1 | 1e-132 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A445G0C0 | 1e-131 | A0A445G0C0_GLYSO; Agamous-like MADS-box protein AGL62 | ||||
STRING | GLYMA17G01771.1 | 1e-131 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-32 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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