PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN03388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 22431.1 Da PI: 9.889 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.9 | 1.6e-07 | 57 | 100 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er RR+++ + f +L++ +P + + + i ++++YIk+L+ KHN03388.1 57 VERERRSKMTQMFTQLQTTVPGvL-----PQATREVIINETIKYIKELE 100 7*********************88.....678899***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.448 | 49 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0015 | 55 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-11 | 56 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-11 | 57 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.95E-5 | 57 | 100 | No hit | No description |
Pfam | PF00010 | 4.1E-5 | 57 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MQGHAETNNS IMAPLSQIPP SSSLHPSNIA ETGNIYTTTS RKRVKKMDHT NCESLNVERE 60 RRSKMTQMFT QLQTTVPGVL PQATREVIIN ETIKYIKELE MKMQKLEELK ESMKEGSILL 120 ACGNNNMNCS VTVSVSANVA FFGIQSLPRS GLVSVIMKVF CKHRAEILAA NVSVNNGKLI 180 LAITAMVQNG GVVENIRRQI LSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN03388.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006600339.1 | 1e-147 | uncharacterized protein LOC102663211 | ||||
Refseq | XP_028208646.1 | 1e-147 | uncharacterized protein LOC114391851 | ||||
TrEMBL | A0A445G0R7 | 1e-137 | A0A445G0R7_GLYSO; Uncharacterized protein | ||||
TrEMBL | K7MJK2 | 1e-137 | K7MJK2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G02615.1 | 1e-138 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14330 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 8e-08 | bHLH family protein |
Publications ? help Back to Top | |||
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