PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN03312.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

CAMTA

Protein Properties

Length: 1032aa MW: 115794 Da PI: 6.9052

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN03312.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.6	3.4e-51	3	117	3	117
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 + ++rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++np+f rrcywl KHN03312.1 3 EARTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWL 101 459********************************************************************************************** PP CG-1 102 Leeelekivlvhylev 117 L++++e+ivlvhy+e KHN03312.1 102 LDKSMEHIVLVHYREI 117 ***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	2.0E-74	1	118	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	76.617	1	123	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-45	3	116	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.52E-14	479	566	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	4.4E-18	663	777	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.2E-19	663	778	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.74E-16	663	773	No hit	No description
Pfam	PF12796	2.8E-8	664	743	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.547	681	773	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.2E-5	714	743	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.461	714	746	IPR002110	Ankyrin repeat
SMART	SM00248	940	753	782	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.65E-5	855	928	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	6.9	877	899	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.559	879	907	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.034	880	898	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	3.4	900	922	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.163	901	925	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0045	905	921	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	981	1003	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.206	983	1011	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence Send to blast
MEEARTRWLR PNEIHAMLCN YKYFTINVKP VNLPKSGTIV LFDRKMLRNF RKDGHNWKKK 60 KDGKTVKEAH EHLKVGNEER IHVYYAHGQD NPNFVRRCYW LLDKSMEHIV LVHYREIQEM 120 QGSPVTPVNS HSSSVSDPPA PWILSEEIDS GTTTAYAGDT SANINVKSHE LRLHEINTLD 180 WDDLVDANDH NTSTVPNGGT VPYFDLQDQI LLNDSFSNVA NNLSADIPSF GSLTQPIAGS 240 NSVPYNFSSV NLQTMDDQAN PHEQRNNTVS LSGVDSLDTL VNDRLQSQNS FGMWVNPIMS 300 DSPCSVDDPA LESPVSSVHE PYSSLIVDSQ QSSLPGQVFT ITDVSPTCVS STEKSKVANN 360 LSAEIPSFGN LTQPIAGSNR VPYNFSESVT LQTMDNQANP HEQKNNTVSL SGVDSLDTLV 420 NDRLQSQNSF GMWVNHIMSD SPCSVDDPAL ESPVSSIHEP YSSLVVDSQE SSLPEQVFTI 480 TDVSPTCVSS TEKSKVLVTG FFHKDYMHLS KSNLLCVCGD VSVPAEIVQV GVYRCWVSPH 540 SPGFVNLYMS IDGHKPISQV VNFEYRTPAL HDPAVSMEES DNWDEFQLQM RLAYLLFKQL 600 NLDVISTKVS PNRLKEARQF ALKTSFISNS WQYLIKSTED NQIPFSQAKD ALFGIALKSR 660 LKEWLLERIV LGCKTTEYDA HGQSVIHLCA ILGYTWAVSL FSWSGLSLDF RDRSGWTALH 720 WAAYCGREKM VATLLSAGAK PNLVTDPTPQ NPGGCTAADL AYMRGHDGLA AYLSEKSLVQ 780 HFNDMSLAGN ISGSLETSTT DPVISANLTE DQQNLKDTLA AYRTAAEAAS RIHAAFREHS 840 LKLRTKAVAS SHPEAQARKI VAAMKIQHAF RNHKTKKVMA AAARIQCTYR TWKIRKEFLN 900 MRCQAVKIQA AFRCFQVRKH YCKILWSVGV VEKAVLRWRL KRRGFRGLQV KTVEAGTGDQ 960 DQQSDVEEEF FRAGRKQAEE RVERSVVRVQ AMFRSKKAQE EYRRMKLALD QAKLEREFER 1020 LLSTEVDMQL KT

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence Send to blast

MEEARTRWLR PNEIHAMLCN YKYFTINVKP VNLPKSGTIV LFDRKMLRNF RKDGHNWKKK  60
KDGKTVKEAH EHLKVGNEER IHVYYAHGQD NPNFVRRCYW LLDKSMEHIV LVHYREIQEM  120
QGSPVTPVNS HSSSVSDPPA PWILSEEIDS GTTTAYAGDT SANINVKSHE LRLHEINTLD  180
WDDLVDANDH NTSTVPNGGT VPYFDLQDQI LLNDSFSNVA NNLSADIPSF GSLTQPIAGS  240
NSVPYNFSSV NLQTMDDQAN PHEQRNNTVS LSGVDSLDTL VNDRLQSQNS FGMWVNPIMS  300
DSPCSVDDPA LESPVSSVHE PYSSLIVDSQ QSSLPGQVFT ITDVSPTCVS STEKSKVANN  360
LSAEIPSFGN LTQPIAGSNR VPYNFSESVT LQTMDNQANP HEQKNNTVSL SGVDSLDTLV  420
NDRLQSQNSF GMWVNHIMSD SPCSVDDPAL ESPVSSIHEP YSSLVVDSQE SSLPEQVFTI  480
TDVSPTCVSS TEKSKVLVTG FFHKDYMHLS KSNLLCVCGD VSVPAEIVQV GVYRCWVSPH  540
SPGFVNLYMS IDGHKPISQV VNFEYRTPAL HDPAVSMEES DNWDEFQLQM RLAYLLFKQL  600
NLDVISTKVS PNRLKEARQF ALKTSFISNS WQYLIKSTED NQIPFSQAKD ALFGIALKSR  660
LKEWLLERIV LGCKTTEYDA HGQSVIHLCA ILGYTWAVSL FSWSGLSLDF RDRSGWTALH  720
WAAYCGREKM VATLLSAGAK PNLVTDPTPQ NPGGCTAADL AYMRGHDGLA AYLSEKSLVQ  780
HFNDMSLAGN ISGSLETSTT DPVISANLTE DQQNLKDTLA AYRTAAEAAS RIHAAFREHS  840
LKLRTKAVAS SHPEAQARKI VAAMKIQHAF RNHKTKKVMA AAARIQCTYR TWKIRKEFLN  900
MRCQAVKIQA AFRCFQVRKH YCKILWSVGV VEKAVLRWRL KRRGFRGLQV KTVEAGTGDQ  960
DQQSDVEEEF FRAGRKQAEE RVERSVVRVQ AMFRSKKAQE EYRRMKLALD QAKLEREFER  1020
LLSTEVDMQL KT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN03312.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028210855.1	0.0	calmodulin-binding transcription activator 5-like
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	I1MRP1	0.0	I1MRP1_SOYBN; Uncharacterized protein
STRING	GLYMA17G03510.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]