PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN03277.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 379aa MW: 41549.5 Da PI: 5.9206

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN03277.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.5	2.8e-33	192	250	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+a+C vkk+vers+edp+vv++tYeg+H+h+ KHN03277.1 192 LDDGYRWRKYGQKAVKNSPHPRSYYRCTTATCGVKKRVERSSEDPTVVVTTYEGQHTHP 250 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.9E-35	177	252	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-29	184	252	IPR003657	WRKY domain
PROSITE profile	PS50811	32.156	187	252	IPR003657	WRKY domain
SMART	SM00774	3.5E-39	192	251	IPR003657	WRKY domain
Pfam	PF03106	7.8E-27	193	250	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MANSVAFSDE IPNMSMSFPF SPAFSSSIFD MMPPPPPSSS HDPKAPNFAN SFMDLLAVPA 60 DYYTPSLFDW SQNTHFSTTT STTQINHPLP SPASSNVPDG SEVLNTPASP NSSSISSSSN 120 EAAAATTANK TTGNDNEEEE DETAIDATAG REEEDHQDQD KTKKQLKPKK KNQKKQREPR 180 FAFMTKSEVD HLDDGYRWRK YGQKAVKNSP HPRSYYRCTT ATCGVKKRVE RSSEDPTVVV 240 TTYEGQHTHP CPATSRASFG FMHSEASGFG PTSGLGSAHF MLQQQQQFRD QAQAQAAMLY 300 NSTSSSLSLP LNVVNSASCV NNSYANTSSL SGFLQGQENH QRGFVPSRVV APHIFLRDNG 360 LLQDIVPTQM GNEENEDRV

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MANSVAFSDE IPNMSMSFPF SPAFSSSIFD MMPPPPPSSS HDPKAPNFAN SFMDLLAVPA  60
DYYTPSLFDW SQNTHFSTTT STTQINHPLP SPASSNVPDG SEVLNTPASP NSSSISSSSN  120
EAAAATTANK TTGNDNEEEE DETAIDATAG REEEDHQDQD KTKKQLKPKK KNQKKQREPR  180
FAFMTKSEVD HLDDGYRWRK YGQKAVKNSP HPRSYYRCTT ATCGVKKRVE RSSEDPTVVV  240
TTYEGQHTHP CPATSRASFG FMHSEASGFG PTSGLGSAHF MLQQQQQFRD QAQAQAAMLY  300
NSTSSSLSLP LNVVNSASCV NNSYANTSSL SGFLQGQENH QRGFVPSRVV APHIFLRDNG  360
LLQDIVPTQM GNEENEDRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-28	185	253	10	78	Probable WRKY transcription factor 4
2lex_A	7e-28	185	253	10	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN03277.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-73	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003550853.1	0.0	WRKY transcription factor 23
Refseq	XP_028211760.1	0.0	WRKY transcription factor 23-like isoform X1
Refseq	XP_028211761.1	0.0	WRKY transcription factor 23-like isoform X2
Swissprot	O22900	1e-56	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A445G1A2	0.0	A0A445G1A2_GLYSO; WRKY transcription factor 23 isoform A
TrEMBL	I1MRS9	0.0	I1MRS9_SOYBN; Uncharacterized protein
STRING	GLYMA17G03950.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	6e-45	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]