PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03245.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1003aa    MW: 112774 Da    PI: 7.0739
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03245.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.53e-54241393117
        CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                 +e ++rwl++ ei++iL n++k++lt +++  p+ gsl+L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK g+v+vl+cyYah+e+n+ fqrr+yw
  KHN03245.1  24 NEaEHRWLRPAEICEILRNHKKFKLTPDPPVMPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNEYFQRRSYW 122
                 4559*********************************************************************************************** PP

        CG-1 101 lLeeelekivlvhylev 117
                 +L+e+le+ivlvhy+e 
  KHN03245.1 123 MLDEQLEHIVLVHYREI 139
                 **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.09219145IPR005559CG-1 DNA-binding domain
SMARTSM010765.4E-7522140IPR005559CG-1 DNA-binding domain
PfamPF038598.6E-4925138IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.5E-6451541IPR013783Immunoglobulin-like fold
CDDcd006030.00133452519No hitNo description
PfamPF018336.3E-6453531IPR002909IPT domain
SuperFamilySSF812961.28E-16453538IPR014756Immunoglobulin E-set
SuperFamilySSF484035.44E-15638747IPR020683Ankyrin repeat-containing domain
CDDcd002041.31E-12641744No hitNo description
Gene3DG3DSA:1.25.40.203.5E-15645757IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.52652746IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.751685717IPR002110Ankyrin repeat
SuperFamilySSF525401.04E-8852906IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.015855877IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.114856885IPR000048IQ motif, EF-hand binding site
PfamPF006120.0013859876IPR000048IQ motif, EF-hand binding site
SMARTSM000155.6E-4878900IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.725879907IPR000048IQ motif, EF-hand binding site
PfamPF006123.1E-5881900IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MSSIIPFESL NVSWYVIELE EILNEAEHRW LRPAEICEIL RNHKKFKLTP DPPVMPPAGS  60
LFLFDRKALR YFRKDGHRWR KKKDGKTVRE AHEKLKAGSV DVLHCYYAHG EDNEYFQRRS  120
YWMLDEQLEH IVLVHYREIK EGCKSGISHL PVVPVTLVGS SQNTSVLSST KINSPISLVQ  180
TSFTSSANKV YQNGRASEHE DVNSKNGPQA SSHAQPISNY VLHSAPWLTH EAAGFSELLR  240
NPLISSWPSS FPSYSPGTGL SPWTSIQNSS RNTINMHDGK HHVEASEADL TVRKLSNAGL  300
DSVHRMQDGV IFRDRLITDM CVQPVIDLPT VNQVENEHGL DSFHAQVHDH NDHPVVATTK  360
ILVEQKLQDG GLYNDESEQV EYGEMKKLDS FGRWMDKEIG GDCDNSLMAS DSGNYWSTLD  420
AHSEDKEVSS LRHMQLDVDS LGPSLSQEQL FSIHDFSPDW AYTGVRTKVL IVGTFLGSKK  480
PSSETKWGCM FGEIEVSAEV LADNVIRCQT PLHSPGRVPF YITCSNRLAC SEVREFEFDE  540
NPTKFLGPEG IKISPEEEVR LQMRLLKLVD LGPDNKWLKC SVSECEKCKL KGTMYSVRDD  600
SGVFEETFQI DGIGHINHRD ILFQRLVRDK LYEWLIYKVH EGGKGPHVLD DEGQGVIHLA  660
AALGYVWAMA PLVAAGISPN FRDSRGRTGL HWASYFGREE TVIVLVQLGA TPGAVEDPTS  720
AFPRGQTAAD LGSSRGHKGI AGYLAEADLT NQLSVLTVKE NETGNIATTI AANSALQSVE  780
DDSSSMTMDE QHYLKESLAV FQKSAHAAAS ILAAFRARSF CQRQLAQSSS DISEVLDVVA  840
DSLSKVQNKG HFEDYLHFAA LKIQKRYRGW KGRKDFLKIR DRIVKIQAHI RGHQVRKQYK  900
KVVWSVSIVE KAILRWRRKG AGLRGFRVGQ PVGVVVKDAE KSDEYEFLSI GRRQKSDDVK  960
KALDRVKSMV RNPEARDQYM RLIMKYEKFK IDDGGSSQSQ HVG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550574.10.0calmodulin-binding transcription activator 2 isoform X1
RefseqXP_028211714.10.0calmodulin-binding transcription activator 2-like isoform X1
TrEMBLA0A445G1E80.0A0A445G1E8_GLYSO; Calmodulin-binding transcription activator 1 isoform A
TrEMBLK7MJU50.0K7MJU5_SOYBN; Uncharacterized protein
STRINGGLYMA17G04310.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]