PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN03238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 1021aa MW: 113137 Da PI: 7.8739 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.4 | 2.8e-40 | 160 | 237 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ KHN03238.1 160 VCQVQDCRADLSNAKDYHRRHKVCDIHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 237 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-31 | 155 | 222 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.898 | 158 | 235 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-37 | 159 | 240 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.4E-29 | 161 | 234 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 2.2E-6 | 277 | 301 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.37E-6 | 806 | 925 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.2E-6 | 812 | 923 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 8.96E-8 | 812 | 922 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1021 aa Download sequence Send to blast |
MEAEFGAKNQ YLYGPVVSGM KKAVVGNGKR SLEWDLNDWR WDGDLFTAQP LNSVPSDCRG 60 RQFSPPHPEI PAKNANPSTT NLSYSVFISG EGKRELEKRR RGVIGEGEGE GLNYEAGSLS 120 LNLAGQGYPL MVEEEEKSGK KTKVIGTTTA STTTASNRAV CQVQDCRADL SNAKDYHRRH 180 KVCDIHSKAT MALVGNVMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNR RRRKTHPDVS 240 VVNEGSLNDQ RGSNYLLMSL LRILTNLHSN GSDHTRNQDI LSHLLKNLAS LAGPNNGGRL 300 APLLEESKDL VNAGTPGAAQ DKPNLNSNAP EASRPSSFIK TDNVIITQDP TMPVAQYETP 360 ADGRTQKCIA SGDGGVGNSK PPSRPLFSNV CQPRDSLPSQ LTTAETKVGR GNLNNIDLNN 420 GYNDIQNTVE NHKKPYPPVA SVMGSIDRAS WLQRDSLKSS PPQTSRNSDS TSIQSPSSSS 480 GEAQSRTDRI VFKLFGKDPS DFPLLIRSQI LNWLSHSPTE MESYIRPGCI ILTIYLRLEK 540 SAWEELYCNL GSSLRKLLAE SNDSFWRTGW VYARVQHSVA FLYNGQVVLD VPLHLKSPQH 600 CRISCIKPLA VPASASAQFI VKGFNLFQSS TRLLCALEGK YLVHASCHGL IGGADAPIQH 660 LSFSCHIPNV TGRGFIEVVE DHGLSSCSFP FIVAEQEVCS EICKLENVIE AAETTDDIQI 720 KKQQMEEMTR ALDFLQEMGW LLHRSHVKVK LGPMAPFRDL FQFNRFAWLV DFSMDHGWCA 780 VMNKLLDIIF EGGVDAGEHA SIELALLNMG LLHTAVKRNC RPMVELLLRF VPVKTSDGAD 840 SEVKQVDEAS DRFLFRPDTV GPAGLTPLHV AASMSGLEDV LDALTDDPRM LGIEAWKSSR 900 DSTGLTPNDY ACLRGYYSYI QLVQKKTNKK GERQHVVDIT GIVVDSYTTQ KQSNGHRTCR 960 VSSLQTEKIG MRTAMVYWPV MLTMVTIAAV CVCVALLFKS SPRVYYVFQP FNWESLEYGA 1020 M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-30 | 152 | 234 | 2 | 84 | squamosa promoter binding protein-like 4 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN03238.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028241527.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Refseq | XP_028241528.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A0R0FJD6 | 0.0 | A0A0R0FJD6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G04400.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
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