PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN02913.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CAMTA | ||||||||
Protein Properties | Length: 886aa MW: 100052 Da PI: 6.7741 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 165.4 | 9.8e-52 | 36 | 152 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 +e ++rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++np+f rrcyw KHN02913.1 36 EEaRTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYW 134 4559*********************************************************************************************** PP CG-1 101 lLeeelekivlvhylevk 118 lL++++e+ivlvhy+e++ KHN02913.1 135 LLDKSMEHIVLVHYRETQ 152 ***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.149 | 31 | 157 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.2E-75 | 34 | 152 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.0E-45 | 37 | 150 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 8.4E-4 | 380 | 472 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 7.0E-15 | 383 | 470 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 2.0E-4 | 383 | 469 | IPR002909 | IPT domain |
CDD | cd00204 | 2.60E-16 | 568 | 678 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.3E-17 | 569 | 682 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 7.77E-19 | 570 | 683 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 9.1E-8 | 576 | 648 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.857 | 586 | 678 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1.1E-5 | 619 | 648 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.007 | 619 | 651 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 940 | 658 | 687 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 8.187 | 839 | 867 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 886 aa Download sequence Send to blast |
MANNLAVQLV GSEMHGFHTL QGTYFTVDLD VGSIMEEART RWLRPNEIHA MLCNYKYFTI 60 NVKPVNLPKS GTIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA 120 HGQDNPNFVR RCYWLLDKSM EHIVLVHYRE TQEMQGSPVT PVNSHSSSVS DPPAPWILSE 180 EIDSGTTTAY TGAFLIWTKT DMSNNINVKS HELRLHEINT LEWDDLVDTN DHNASTVPNG 240 GTVPYFDQQD QILLNDSFGN VANNLSAEIP SFGNLTQPIA GSNRVPYNFS ESVTLQTMDN 300 QANPHEQKNN TVSLSGVDSL DTLVNDRLQS QDSFGMWVNH IMSDSPCSVD DPALESPVSS 360 IHEPYSSLVV DSQESSLPEQ VFTITDVSPT CVSSTEKSKV LVTGFFLKDY MHLSKSNLLC 420 VCGDVSVPAE IVQVGVYRCW VSPHSPGFVN LYLSIDGHKP ISQVVNFEYR TPALHDPAVS 480 MEESDNWDEF RQQMRLAYLL FAKQLNLDVI SSKVSPNRLK EARQFALKTS FISNSWQYLI 540 KSTEDNQIPF SQAKDALFGI TLKNRLKEWL LERIVLGCKT TEYDAHGQSV IHLCAILGYN 600 WAVSLFSWSG LSLDFRDRFG WTALHWAAYC GREKMVATLL SAGAKPNLVT DPTPQNPGGC 660 TAADLAYMRG HDGLAAYLSE KSLVQHFNDM SLAGNISGSL ETSTTDPVNP ANLTEDQQNL 720 KDTLTAYRTA AEAASRIHAA FREHSLKLRT KAVASSNPEA QARKKAAFRC FQVRKHYRKI 780 LWSVGVVEKA VLRWRLKRRG FRGLQVKTVD AGTGDQDQQS DVEEEFFRTG RKQAEERVER 840 SVVRVQAMFR SKKAQEEYRR MKLALNQAKL EREYEQLLST EVDMQL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN02913.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014633698.1 | 0.0 | calmodulin-binding transcription activator 5 isoform X1 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | K7L3K8 | 0.0 | K7L3K8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G37090.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4288 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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