PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02913.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 886aa    MW: 100052 Da    PI: 6.7741
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02913.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.49.8e-52361523118
        CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                 +e ++rwl+++ei+a+L n++ +++  ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++np+f rrcyw
  KHN02913.1  36 EEaRTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYW 134
                 4559*********************************************************************************************** PP

        CG-1 101 lLeeelekivlvhylevk 118
                 lL++++e+ivlvhy+e++
  KHN02913.1 135 LLDKSMEHIVLVHYRETQ 152
                 ***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.14931157IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-7534152IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-4537150IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.4E-4380472IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.0E-15383470IPR014756Immunoglobulin E-set
PfamPF018332.0E-4383469IPR002909IPT domain
CDDcd002042.60E-16568678No hitNo description
Gene3DG3DSA:1.25.40.202.3E-17569682IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.77E-19570683IPR020683Ankyrin repeat-containing domain
PfamPF127969.1E-8576648IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.857586678IPR020683Ankyrin repeat-containing domain
SMARTSM002481.1E-5619648IPR002110Ankyrin repeat
PROSITE profilePS5008811.007619651IPR002110Ankyrin repeat
SMARTSM00248940658687IPR002110Ankyrin repeat
PROSITE profilePS500968.187839867IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MANNLAVQLV GSEMHGFHTL QGTYFTVDLD VGSIMEEART RWLRPNEIHA MLCNYKYFTI  60
NVKPVNLPKS GTIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA  120
HGQDNPNFVR RCYWLLDKSM EHIVLVHYRE TQEMQGSPVT PVNSHSSSVS DPPAPWILSE  180
EIDSGTTTAY TGAFLIWTKT DMSNNINVKS HELRLHEINT LEWDDLVDTN DHNASTVPNG  240
GTVPYFDQQD QILLNDSFGN VANNLSAEIP SFGNLTQPIA GSNRVPYNFS ESVTLQTMDN  300
QANPHEQKNN TVSLSGVDSL DTLVNDRLQS QDSFGMWVNH IMSDSPCSVD DPALESPVSS  360
IHEPYSSLVV DSQESSLPEQ VFTITDVSPT CVSSTEKSKV LVTGFFLKDY MHLSKSNLLC  420
VCGDVSVPAE IVQVGVYRCW VSPHSPGFVN LYLSIDGHKP ISQVVNFEYR TPALHDPAVS  480
MEESDNWDEF RQQMRLAYLL FAKQLNLDVI SSKVSPNRLK EARQFALKTS FISNSWQYLI  540
KSTEDNQIPF SQAKDALFGI TLKNRLKEWL LERIVLGCKT TEYDAHGQSV IHLCAILGYN  600
WAVSLFSWSG LSLDFRDRFG WTALHWAAYC GREKMVATLL SAGAKPNLVT DPTPQNPGGC  660
TAADLAYMRG HDGLAAYLSE KSLVQHFNDM SLAGNISGSL ETSTTDPVNP ANLTEDQQNL  720
KDTLTAYRTA AEAASRIHAA FREHSLKLRT KAVASSNPEA QARKKAAFRC FQVRKHYRKI  780
LWSVGVVEKA VLRWRLKRRG FRGLQVKTVD AGTGDQDQQS DVEEEFFRTG RKQAEERVER  840
SVVRVQAMFR SKKAQEEYRR MKLALNQAKL EREYEQLLST EVDMQL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02913.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014633698.10.0calmodulin-binding transcription activator 5 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLK7L3K80.0K7L3K8_SOYBN; Uncharacterized protein
STRINGGLYMA07G37090.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]