PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02780.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26496.2 Da    PI: 8.9614
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02780.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.42.2e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +ri+nk+nrqvtfskRrng+lKKA+ELSvLCdae+a++ifss+gkl+ yss
  KHN02780.1  9 ERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALVIFSSRGKLFQYSS 59
                69***********************************************96 PP
2K-box65.51.9e-2277168797
       K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  + +e++ ++ l+qel  L+ + e+Lqr+qR+llGe+Le+Ls+keL++Le+qL++ l + R++ ++ l++ i+el  k ++l+++nk L+++
  KHN02780.1  77 GDvAEHQSEQCLYQELLVLRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKHLTQKLVSRIDELHGKVHSLEQANKHLESQ 168
                 3347788899*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.104161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-29270IPR002100Transcription factor, MADS-box
CDDcd002654.94E-37269No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-30323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-1981167IPR002487Transcription factor, K-box
PROSITE profilePS5129713.56385179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGKVVLER IQNKINRQVT FSKRRNGLLK KAFELSVLCD AEIALVIFSS RGKLFQYSST  60
EIIEKYRQCC FNMSQTGDVA EHQSEQCLYQ ELLVLRVKHE SLQRTQRNLL GEELEPLSMK  120
ELHSLEKQLD RTLAQARKHL TQKLVSRIDE LHGKVHSLEQ ANKHLESQER GKYTQICEGS  180
PNGHILQDKQ VNQFEYGTAG SFRLQQEQTT ASKGKEIETI EDWLRPKQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22162162MEF2C
5f28_B5e-22162162MEF2C
5f28_C5e-22162162MEF2C
5f28_D5e-22162162MEF2C
6byy_A5e-22162162MEF2 CHIMERA
6byy_B5e-22162162MEF2 CHIMERA
6byy_C5e-22162162MEF2 CHIMERA
6byy_D5e-22162162MEF2 CHIMERA
6bz1_A6e-22162162MEF2 CHIMERA
6bz1_B6e-22162162MEF2 CHIMERA
6bz1_C6e-22162162MEF2 CHIMERA
6bz1_D6e-22162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0987530.0BT098753.1 Soybean clone JCVI-FLGm-12N24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028182951.11e-168MADS-box transcription factor 17-like isoform X2
SwissprotQ7XUN27e-58MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLK7LL571e-165K7LL57_SOYBN; Uncharacterized protein
STRINGGLYMA10G38580.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.19e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  4. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]